Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquila_20chrysaetos_20canadensis_20[refseq_20GCF_5F000766835.1_20201 4-10-14] 1,142 sequences; 1,192,743,076 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq14 129 8e-25 seq6 114 2e-20 seq20 111 2e-19 seq49 89.7 7e-13 >seq14 Length=16121296 Score = 129 bits (142), Expect = 8e-25 Identities = 145/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 9228 TATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCC 9287 ||||| |||||| || | |||| | | | ||| || ||||||||||||||||| ||| Sbjct 1144857 TATTTTTTATTAAATGCCTCCAGTAAACGCAGCAGGTGTAAGAACAGATTGATGATGTCC 1144916 Query 9288 AAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAG 9347 ||||||| |||||| | || || | ||| |||||||| || | || || || || | Sbjct 1144917 AAGTAGAGATTGATTGCAGCCAATATATATTCTTCAGGGGATAATTTGTGCATGAGCAAA 1144976 Query 9348 TGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGC 9407 ||||||||||| ||||| ||||| ||||| | ||| || ||| ||||| | |||| | Sbjct 1144977 TGCGTGTCATAAATAATAAATCCACAGAACAGAAGAGCTCCAGCAGCAGCAAACACCAAC 1145036 Query 9408 TCCACTGTTTCACT 9421 |||| || ||||| Sbjct 1145037 TCCATCGTCTCACT 1145050 Score = 109 bits (120), Expect = 7e-19 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| ||||| ||||||||||| || | |||||||| ||||| ||||| Sbjct 1146187 CCTGCTCCAAATTTGCTGAAGTCTCTCTTTGACTGCAAGGTATATGCGGTCAGTCCAAGA 1146246 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAACA 9599 || || |||||||| || || || ||||||| |||| ||||||||||||| | || Sbjct 1146247 AATACAGCAGTAGTAAGAATAAAGGCTTGCAACACGATGGACACATCATAGAAACTCACT 1146306 Query 9600 ACA 9602 ||| Sbjct 1146307 ACA 1146309 >seq6 Length=21260008 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 17300072 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 17300013 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||| | Sbjct 17300012 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAAG 17299953 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | |||||| || Sbjct 17299952 CAACCACTCTCTCACC 17299937 >seq20 Length=13035929 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||||||| || | ||| || ||||| |||||||| ||||||| || | || | Sbjct 5722762 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCCCTTTTCT 5722821 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 5722822 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 5722881 Query 36300 C 36300 | Sbjct 5722882 C 5722882 >seq49 Length=8140862 Score = 89.7 bits (98), Expect = 7e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478 ||||||| || |||||||||| || || || |||||||| || || || || ||||| | Sbjct 7591027 CATATGTTTCATATGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCAT 7590968 Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538 ||||||||||||| || || | || || | || || || | || |||||||| | Sbjct 7590967 AATAAATGGTTTCAAAAATGTGCTGGTTCAAGCGCTGGGCCTCAGGACTTTCAAATGGGT 7590908 Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGG 65590 | | | | ||||| || ||||| | || || |||||||| || || || Sbjct 7590907 ACCTCATCAAGATAAAAGCATCTGCCAGGCCCTGCACACCAATGCCAATGGG 7590856 Score = 87.8 bits (96), Expect = 2e-12 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGT 66119 ||||| ||||| ||||||||||||||||| || || | || | ||||||| || || Sbjct 7587298 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 7587239 Query 66120 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCATAATGCCACGG 66178 || || || || || ||||| |||||| || || ||| | | || || ||||||| || Sbjct 7587238 TCTTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATGG 7587180 Query 66179 TTCCAAGTATATGGCCATAACTCCAGG 66205 |||| ||| ||||| | | | ||||| Sbjct 7587179 CTCCAGGTAGATGGCAAAAGCCCCAGG 7587153 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| |||| ||| || ||||||||||| | ||| || || || || || || || | | Sbjct 7581262 CACTGAATACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATCCTTGCTGCCAGGA 7581203 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 | || || || || |||| || || || || || |||| || ||||| || |||| Sbjct 7581202 TAGCGTAGTCAGGGTGTTTGGTGGTCAGGGTTGCAGCCGTTTCAGCAGCCAGTGTATCCA 7581143 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| |||||||| || ||| | || | ||| || || || ||||| Sbjct 7581142 GTTCCACCGTTGTGACACCACTGTACAGTCCCTGAATCACTTTCAT 7581097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658163404583280