Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquila_20chrysaetos_20canadensis_20[refseq_20GCF_5F000766835.1_20201 4-10-14] 1,142 sequences; 1,192,743,076 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq232 136 6e-28 seq64 132 8e-27 >seq232 Length=309355 Score = 136 bits (150), Expect = 6e-28 Identities = 176/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| || || || |||||||| || ||||||||||| || || Sbjct 195490 CGCCAAGCGGCATCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 195431 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || || ||||| |||| || | |||| || |||| Sbjct 195430 CCGCCGCCTGGCTCGGCGCGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 195371 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || ||||| ||||||| ||| ||| |||| || || || ||| ||||| Sbjct 195370 GCGTGGCGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGA 195311 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 195310 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCCCTCAAGCGCCAGGG 195251 Query 16672 CCG 16674 || Sbjct 195250 ACG 195248 Score = 132 bits (146), Expect = 8e-27 Identities = 175/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 252264 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 252205 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || || ||||| |||| || | |||| || |||| Sbjct 252204 CCGCCGCCTGGCTCGGCGCGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 252145 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| ||||||| ||| ||| |||| || ||| || ||| ||||| Sbjct 252144 GCGCGGCGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGCGACGCTGTCACCTACACCGA 252085 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 252084 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCCCTCAAGCGCCAGGG 252025 Query 16672 CCG 16674 || Sbjct 252024 ACG 252022 Score = 127 bits (140), Expect = 3e-25 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 244324 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 244383 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || || ||||| |||| || | |||| || |||| Sbjct 244384 CCGCCGCCTGGCTCGGCGCGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 244443 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| ||||||| ||| ||| |||| || || || ||| ||||| Sbjct 244444 GCGCGGCGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGA 244503 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 244504 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCCCTCAAGCGCCAGGG 244563 Query 16672 CCG 16674 || Sbjct 244564 ACG 244566 Score = 123 bits (136), Expect = 4e-24 Identities = 173/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||| ||||| || || Sbjct 220189 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACTAAGCCGGCCAT 220248 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || || ||||| |||| || | |||| || |||| Sbjct 220249 CCGCCGCCTGGCTCGGCGCGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 220308 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| ||||||| ||| ||| |||| || || || ||| ||||| Sbjct 220309 GCGCGGCGTACTGAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGA 220368 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 220369 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCCCTCAAGCGCCAGGG 220428 Query 16672 CCG 16674 || Sbjct 220429 ACG 220431 >seq64 Length=6427966 Score = 132 bits (146), Expect = 8e-27 Identities = 175/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 958901 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 958842 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || || ||||| |||| || | |||| || |||| Sbjct 958841 CCGCCGCCTGGCTCGGCGCGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 958782 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| ||||||| ||| ||| |||| || ||| || ||| ||||| Sbjct 958781 GCGCGGCGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGCGACGCTGTCACCTACACCGA 958722 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 958721 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCCCTCAAGCGCCAGGG 958662 Query 16672 CCG 16674 || Sbjct 958661 ACG 958659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074155861406