Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquila_20chrysaetos_20canadensis_20[refseq_20GCF_5F000766835.1_20201 4-10-14] 1,142 sequences; 1,192,743,076 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq80 89.7 4e-13 seq36 84.2 2e-11 >seq80 Length=5371318 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| || | |||||| ||||| ||||| || ||||||||||| | || ||| | || Sbjct 4804762 CAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 4804821 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| ||| | || |||| ||| || || || | ||| || ||||| Sbjct 4804822 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTC 4804881 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || ||| || | | | ||||| | |||||| ||||| ||| ||| Sbjct 4804882 CTGGATCTTGGC--CTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTTATG 4804939 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || ||||| || || ||||| |||||||| Sbjct 4804940 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4804974 >seq36 Length=10026654 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/207 (70%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 16735 CAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTT 16794 ||| ||||| ||||| || ||||||||||||| || ||| | || |||| || || Sbjct 5148314 CAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAGCTGCTT 5148255 Query 16795 GCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTTGC 16852 ||| ||| | || |||| ||| || || || | ||| || ||||| || || || Sbjct 5148254 GCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGC 5148195 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | ||||| | ||| || || | ||||||||| || || ||| Sbjct 5148194 --CTTGACATTCTCAATGGTGTCACTGGGTTCAACCTCAAGGGTGATGGTCTTGCCAGTC 5148137 Query 16913 AGCGTTTTGACAAAAATCTGCATTTTG 16939 || || || ||||| |||||||||||| Sbjct 5148136 AGGGTCTTCACAAAGATCTGCATTTTG 5148110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405082361934580