Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquila_20chrysaetos_20canadensis_20[refseq_20GCF_5F000766835.1_20201
4-10-14] 1,142 sequences; 1,192,743,076 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq6 114 2e-20
seq20 111 2e-19
seq49 93.3 5e-14
>seq6
Length=21260008
Score = 114 bits (126), Expect = 2e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742
|||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| |
Sbjct 17300072 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 17300013
Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802
| ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||| |
Sbjct 17300012 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAAG 17299953
Query 32803 CAATAAGTCTCTCTCC 32818
||| | |||||| ||
Sbjct 17299952 CAACCACTCTCTCACC 17299937
>seq20
Length=13035929
Score = 111 bits (122), Expect = 2e-19
Identities = 97/121 (80%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742
|||| |||||||| || | ||| || ||||| |||||||| ||||||| || | || |
Sbjct 5722762 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCCCTTTTCT 5722821
Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802
| |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||| |
Sbjct 5722822 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 5722881
Query 32803 C 32803
|
Sbjct 5722882 C 5722882
>seq49
Length=8140862
Score = 93.3 bits (102), Expect = 5e-14
Identities = 120/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869
|||| |||| ||| || ||||||||||| | ||| || || || || || || || || |
Sbjct 7581262 CACTGAATACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATCCTTGCTGCCAGGA 7581203
Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929
| || || || || |||| || || || || || |||| || ||||| || ||||
Sbjct 7581202 TAGCGTAGTCAGGGTGTTTGGTGGTCAGGGTTGCAGCCGTTTCAGCAGCCAGTGTATCCA 7581143
Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975
||| |||||||| |||||| | || | ||| || || || |||||
Sbjct 7581142 GTTCCACCGTTGTGACACCACTGTACAGTCCCTGAATCACTTTCAT 7581097
Score = 91.5 bits (100), Expect = 2e-13
Identities = 110/147 (75%), Gaps = 2/147 (1%)
Strand=Plus/Minus
Query 63071 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63130
||||| ||||| ||||||||||||||||| || || | || || ||||||| || ||
Sbjct 7587298 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 7587239
Query 63131 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63189
|| || || || || ||||| |||||| || || ||| | | || || ||||||| ||
Sbjct 7587238 TCTTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATGG 7587180
Query 63190 TTCCAAGTATATGGCCATAACTCCAGG 63216
|||| ||| ||||| | | | |||||
Sbjct 7587179 CTCCAGGTAGATGGCAAAAGCCCCAGG 7587153
Score = 89.7 bits (98), Expect = 7e-13
Identities = 123/172 (72%), Gaps = 0/172 (0%)
Strand=Plus/Minus
Query 62430 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62489
||||||| || |||||||||| || || || |||||||| || || || || ||||| |
Sbjct 7591027 CATATGTTTCATATGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCAT 7590968
Query 62490 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGAT 62549
||||||||||||| || || | || || | || || || | || |||||||| |
Sbjct 7590967 AATAAATGGTTTCAAAAATGTGCTGGTTCAAGCGCTGGGCCTCAGGACTTTCAAATGGGT 7590908
Query 62550 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGG 62601
| | | | ||||| || ||||| | || || |||||||| || || ||
Sbjct 7590907 ACCTCATCAAGATAAAAGCATCTGCCAGGCCCTGCACACCAATGCCAATGGG 7590856
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633622954903200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |