Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquila_20chrysaetos_20canadensis_20[refseq_20GCF_5F000766835.1_20201 4-10-14] 1,142 sequences; 1,192,743,076 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq36 152 9e-32 seq80 150 3e-31 seq142 93.3 8e-14 seq20 84.2 4e-11 >seq36 Length=10026654 Score = 152 bits (168), Expect = 9e-32 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 68262 AGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTC 68321 || ||||| || || |||||||| || ||||| || || | |||||||| | |||||| Sbjct 5148313 AGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAGCTGCTTG 5148254 Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || || || || || || || || ||||||||||||||||| || ||||| ||| Sbjct 5148253 CCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCC 5148194 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 ||||| ||| |||||||| | ||| || || | ||||||||| || || || ||| Sbjct 5148193 TTGACATTCTCAATGGTGTCACTGGGTTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGG 5148134 Query 68442 GTCTTGACGAATATCTGCATTATG 68465 ||||| || || ||||||||| || Sbjct 5148133 GTCTTCACAAAGATCTGCATTTTG 5148110 >seq80 Length=5371318 Score = 150 bits (166), Expect = 3e-31 Identities = 159/208 (76%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || ||||| || || |||||||| || || || || || | ||||||||| | Sbjct 4804767 CAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCA 4804826 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| || || || || || || || || || || ||||||||||||||||| || | Sbjct 4804827 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGA 4804886 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||| |||||||| ||| |||||||| | || ||||||| ||| ||||| || | Sbjct 4804887 TCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTTATGGTCTTGC 4804946 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || |||||||| || || |||||||| Sbjct 4804947 CAGTCAGGGTCTTCACAAAGATCTGCAT 4804974 >seq142 Length=2100711 Score = 93.3 bits (102), Expect = 8e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 |||||||| || || ||||| ||||||||| |||||| ||||| | || || ||| Sbjct 2014200 CCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATCGTGTCGTTGGGCTCCACCTCC 2014259 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||||||||| ||||| || |||||||| || |||||||| Sbjct 2014260 AGGGTGATGGTTTTCCCCGTCAGCGTCTTGACAAAAATCTGCAT 2014303 >seq20 Length=13035929 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 10740 ACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGG 10799 ||||||||| | |||||||| | ||| ||||||||||||||||||| | |||||| || Sbjct 5725760 ACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 5725819 Query 10800 TACCGGATGGGGAA 10813 ||| |||||||||| Sbjct 5725820 TACTGGATGGGGAA 5725833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921609243840240