Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquila_20chrysaetos_20canadensis_20[refseq_20GCF_5F000766835.1_20201 4-10-14] 1,142 sequences; 1,192,743,076 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq36 123 6e-23 seq80 122 2e-22 seq5 89.7 1e-12 >seq36 Length=10026654 Score = 123 bits (136), Expect = 6e-23 Identities = 151/205 (74%), Gaps = 6/205 (3%) Strand=Plus/Minus Query 194941 AGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTA 195000 || ||||| || || || || ||||| |||| || || | |||||||| |||||||| Sbjct 5148313 AGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAGCTGCTTG 5148254 Query 195001 CCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGC 195060 || || ||||| || | || || || || ||||||||||| ||||| || || || | Sbjct 5148253 CCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCC 5148194 Query 195061 TTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||| |||||||||||||| ||| ||| || |||||||| | ||||| || ||| Sbjct 5148193 TTGACATTCTCAATGGTGTC---ACTGGGTTCAACCTCAAGGGTGATGGTCTTGCCAGTC 5148137 Query 195118 AAAGTTTTTACGAACACTTGCATTT 195142 | || || || || | ||||||| Sbjct 5148136 AGGGTCTTCACAAAGATCTGCATTT 5148112 >seq80 Length=5371318 Score = 122 bits (134), Expect = 2e-22 Identities = 155/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || ||||| || || || || ||||| || | || || | ||||||||| Sbjct 4804766 ACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 4804825 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || || || || ||||||||||| ||||| || Sbjct 4804826 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGG 4804885 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| |||||||||||||| ||| || ||||| ||||| | ||| Sbjct 4804886 ATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACTTCCAGGGTTATGGTC 4804942 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 4804943 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4804974 >seq5 Length=22535033 Score = 89.7 bits (98), Expect = 1e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 |||||||||||||||| || | || || | |||||||| ||||||||||| || || | Sbjct 17931471 CTTTTTGAATATTGTAGTCAGACAGTGTGCGTCCATCTTCTAGCTGCTTACCAGCAAAAA 17931530 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | ||||| || || ||||||||||||||| Sbjct 17931531 TCAGTCGCTGCTGATCTGGAGGAATGCCT 17931559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109465366203914