Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquila_20chrysaetos_20canadensis_20[refseq_20GCF_5F000766835.1_20201 4-10-14] 1,142 sequences; 1,192,743,076 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq20 123 3e-23 seq6 111 2e-19 seq49 102 9e-17 >seq20 Length=13035929 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||||| || | |||||||||||| || | |||||||| | ||| ||||| | Sbjct 5722762 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCCCTTTTCT 5722821 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| || || || ||||| || ||||||||||| || ||||| ||||||||||||| Sbjct 5722822 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 5722881 Query 19103 CAACTAGTCTTTCTCC 19118 | |||| | |||||| Sbjct 5722882 CTACTACACGTTCTCC 5722897 Score = 86.0 bits (94), Expect = 7e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283 |||||||| || | || || | | |||||||||||||||||| |||||||| || || Sbjct 5724889 ATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGC 5724948 Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 ||||| || || || ||||| | |||||||| || |||||||| Sbjct 5724949 AATCTGGAAGCCATAGAAACAGCGAGCTTCTGTGATTTGTACTTC 5724993 >seq6 Length=21260008 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| || || || | ||||||||||| || || || | Sbjct 17300072 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 17300013 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| ||||||| |||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 17300012 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAAG 17299953 Query 19103 CAACTAGTCTTTCTCC 19118 |||| | ||| || || Sbjct 17299952 CAACCACTCTCTCACC 17299937 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 19335 AAATCTTTCG-ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATA 19393 ||| ||||| |||| |||||||| || ||||||||||| |||||||||||||| | | Sbjct 17295759 AAAGCTTTCTCACCAGGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAATGCCAGAA 17295700 Query 19394 CATGTTTAATAAAATGTTTTTCATCTG 19420 |||| ||||| ||||||||||||| Sbjct 17295699 CATGAGAGATAAAGTGTTTTTCATCTG 17295673 >seq49 Length=8140862 Score = 102 bits (112), Expect = 9e-17 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| |||||||| ||||| || || | ||| ||| | ||||||| |||||| || | Sbjct 7594942 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGTTCTGCAATATGGATGT 7594883 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | ||||| || ||||||||||| || || ||||| || |||||||| | | | | | Sbjct 7594882 TGAGAGACTGGCTCTGATCAATGAAAGCCCCTCTGTCTGCTGCCATCTTGAGGACAGTCT 7594823 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | |||||||| ||||| ||||| | ||| || | ||| || || Sbjct 7594822 TCTGGGAGATCTCCCACACTGTCTTATACAGTTGCTTCAAGTCATCAGG 7594774 Score = 91.5 bits (100), Expect = 2e-13 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 47902 CAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGA 47961 || ||||||||| | | ||||| | | |||||| | ||| ||||| | ||||||| Sbjct 7588662 CACCTACCTCATCTTTGCTGGTATACTCCACTATTTCTGTACACAGATTGCTGCATTTGA 7588603 Query 47962 TAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAG 48021 | || || || || || ||||| | ||| || | ||| ||||| ||||| | | Sbjct 7588602 TGGTCCCTAAGTTCTGCTGATTGCTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACG 7588543 Query 48022 GTGTTCCAGTTTCTATCTGAGATTCAATGATAG 48054 |||| ||||| ||| |||||||||||||||||| Sbjct 7588542 GTGTGCCAGTCTCTGTCTGAGATTCAATGATAG 7588510 Score = 86.0 bits (94), Expect = 7e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||| ||||| || || ||||| || | || || ||||| || || || || || ||| Sbjct 7592530 TGAAACTCTCCTGAGAGGACTCTGCGTGTGTAGATGTTACTGGTGTAGGGCTCAATGGAT 7592471 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || || || |||||||| || || || ||||||| | || | | ||| Sbjct 7592470 TCATTATTGCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATGGGAGAAAGGAGAAGGCTG 7592411 Query 47448 TTTCTTACTCCATAT 47462 ||||| || |||||| Sbjct 7592410 TTTCTGACACCATAT 7592396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562100775896880