Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquila_20chrysaetos_20canadensis_20[refseq_20GCF_5F000766835.1_20201
4-10-14] 1,142 sequences; 1,192,743,076 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq73 100 2e-15
seq36 96.9 2e-14
seq80 91.5 1e-12
seq7 86.0 4e-11
>seq73
Length=5915304
Score = 100 bits (110), Expect = 2e-15
Identities = 222/328 (68%), Gaps = 4/328 (1%)
Strand=Plus/Plus
Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555
|||||||| || ||||| ||||| |||| |||||| || || | | | | ||| ||
Sbjct 3898171 ACTGCTTGCGAGCGTGCAAAGCGTACTCTGTCTTCTAGCACGCAGGCCAGTATCGAAATT 3898230
Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615
|||||||| | ||| || ||||| | | || ||||| || ||| ||||||||
Sbjct 3898231 GATTCTCTCTATGAGGGTATTGACTTCTACACATCCATTACCAGAGCTCGCTTTGAAGAG 3898290
Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675
| | |||| || || | || | || || || ||| | | || | ||| |
Sbjct 3898291 CTGAATGCTGACCTGTTCCGTGGCACTCTGGATCCTGTGGAAAAGGCCCTGCGGGATGCC 3898350
Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735
||||| |||||||| || ||||||| || || || || || || || || | || |||
Sbjct 3898351 AAACTCGACAAATCGCAGATCCATGACATCGTGCTGGTTGGTGGGTCTACTCGTATCCCA 3898410
Query 475736 AAAATAAGAGAAA-TGCTTTCATCATATTTT-AATGGTAAAAAGTTAAATGAAAGTGTAA 475793
|| || ||||| |||| || | | || ||||| ||| || | || | || | |
Sbjct 3898411 AAGATTC-AGAAACTGCTG-CAGGACTTCTTCAATGGCAAAGAGCTGAACAAGAGCATCA 3898468
Query 475794 ATCCTGATGAAGCTGTTGCATATGGAGC 475821
|||||||||||||||| || ||||| ||
Sbjct 3898469 ATCCTGATGAAGCTGTGGCCTATGGTGC 3898496
Score = 96.9 bits (106), Expect = 2e-14
Identities = 71/83 (86%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149
|||||||| |||||||||||||| || ||||| |||||||| || ||||||||||||||
Sbjct 3899429 GGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGATGCC 3899488
Query 476150 AATGGTATTCTTAATGTTACTGC 476172
||||| || || ||||| ||||
Sbjct 3899489 AATGGCATCCTGAATGTGTCTGC 3899511
>seq36
Length=10026654
Score = 96.9 bits (106), Expect = 2e-14
Identities = 113/153 (74%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
|||||| || ||||| |||||||| || || | || |||||||| ||||| ||||||||
Sbjct 5148269 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTT 5148210
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736
||| || ||||| |||||| ||||| || ||| || || | |||||||| ||
Sbjct 5148209 GTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGTTCAACCTCAAGGGTGAT 5148150
Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || || || ||||| || || || ||
Sbjct 5148149 GGTCTTGCCAGTCAGGGTCTTCACAAAGATCTG 5148117
>seq80
Length=5371318
Score = 91.5 bits (100), Expect = 1e-12
Identities = 112/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
|||||| || ||||| |||||||| || || | || |||||||| ||||| ||||||||
Sbjct 4804819 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTT 4804878
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736
||| || ||||| |||||| ||||| || ||| || | | ||| ||||| ||
Sbjct 4804879 GTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTTAT 4804938
Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || || || ||||| || || || ||
Sbjct 4804939 GGTCTTGCCAGTCAGGGTCTTCACAAAGATCTG 4804971
>seq7
Length=20945089
Score = 86.0 bits (94), Expect = 4e-11
Identities = 87/111 (78%), Gaps = 2/111 (2%)
Strand=Plus/Minus
Query 474778 TCAAGCAACTAAAGATGC-GGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATG 474836
||| || || |||||||| ||| ||| |||| || | |||||||| | | |||||||
Sbjct 19661098 TCAGGCTACGAAAGATGCTGGGCAGA-TTGCTGGCTTGAATGTTTTGAGGGTGATTAATG 19661040
Query 474837 AACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAATTCTGACAAAG 474887
||||||||||||| |||||||| |||||||| || ||| | |||||||
Sbjct 19661039 AACCAACAGCAGCTGCACTTGCCTATGGTCTGGACAAGTCTGAAGACAAAG 19660989
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268130214079016
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |