Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquila_20chrysaetos_20canadensis_20[refseq_20GCF_5F000766835.1_20201 4-10-14] 1,142 sequences; 1,192,743,076 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq73 109 4e-18 seq44 98.7 7e-15 >seq73 Length=5915304 Score = 109 bits (120), Expect = 4e-18 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||||| |||||||||||||| | |||| |||| | || || ||||| ||||||| Sbjct 3896863 CAAAAACCGTATTGGTTGGATTCATTGCAACTTGGTTCTTTGCAGCATCGCCAATCAACC 3896804 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 || || ||||| || | ||| || ||| || || || ||||| || ||||| |||| Sbjct 3896803 TCTCCGTATCTGTGAAGGCAACGTAGCTTGGCGTGGTCCGGTTACCCTGGTCATTGGCAA 3896744 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | ||||| || || |||| ||| ||||||| ||||| | | || || || | ||||| Sbjct 3896743 TGATTTCCACCTTCCCATGTTGGAATACACCAACACAGGAATAGGTGGTGCCAAGATCAA 3896684 Query 282870 TACCAATAGC 282879 | || | ||| Sbjct 3896683 TTCCGACAGC 3896674 Score = 105 bits (116), Expect = 5e-17 Identities = 360/554 (65%), Gaps = 18/554 (3%) Strand=Plus/Minus Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 |||||||| || ||||||||||||||||| | | | || || | ||| |||||||| Sbjct 3898496 GCACCATAGGCCACAGCTTCATCAGGATTGATGCTCTTGTTCAGCTCTTTGCCATTGAAG 3898437 Query 281837 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895 || | || |||| ||| | ||| || ||||||| || || ||||| | || || Sbjct 3898436 AAGTCCTGCAGCAGTT-TCTGAATCTTTGGGATACGAGTAGACCCACCAACCAGCACGAT 3898378 Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 281955 ||||| | ||| ||||| || ||||| | |||| | | ||||| || || || || Sbjct 3898377 GTCATGGATCTGCGATTTGTCGAGTTTGGCATCCCGCAGGGCCTTTTCCACAGGATCCAG 3898318 Query 281956 ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA--GA-GTGAC 282012 | | | |||| ||| | | || ||||| || |||||| |||| || ||| Sbjct 3898317 AGTGCCACGGAACAGGTCAGCATTCAGCTCTTCAAAGCGAGCTCTGGTAATGGATGTG-- 3898260 Query 282013 ATTATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAG 282071 || || ||||| || || | | |||||||| ||| || | | || || ||||| Sbjct 3898259 --TAGAAGTCAATACCCTCATAGAGAGAATCAATTTCGATACTGGCCTGCGTGCTAGAAG 3898202 Query 282072 ATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG----CTTTTGCT 282127 | || | ||| || ||||| || || || || | || | || | | ||| | || Sbjct 3898201 ACAGAGTACGCTTTGCACGCTCGCAAGCAGTGCGGAGGCGACGAACTGCTCTCTTGTTCT 3898142 Query 282128 GATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGA 282187 |||| ||| | || | || | |||||| || ||| | | || | Sbjct 3898141 CGCTGAT----GTCTTTCTTGTGCTTGCGCTTGAATTCAGCAATGAAGTGGTTGACCATG 3898086 Query 282188 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 282247 || || ||||| ||||| || ||||| | ||| | |||| || | | | || | || Sbjct 3898085 CGGTTGTCAAAGTCTTCTCCACCCAAGTGAGTGTCACCTGCAGTGGATTTCACCTCAAAG 3898026 Query 282248 AGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATA 282307 | |||||||||| | || || | |||||| ||| ||||| || | || || ||| Sbjct 3898025 ATGCCATCTTCAATGGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGGTCGAAGATA 3897966 Query 282308 AGTACATTCATTTC 282321 || |||||| |||| Sbjct 3897965 AGAACATTCCTTTC 3897952 >seq44 Length=8792945 Score = 98.7 bits (108), Expect = 7e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 131180 GTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCAT 131239 || || ||| | ||||| || ||||| || |||||| | ||| | | | ||||||||| Sbjct 3199877 GTGGCTACAGTGGCATTCGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTATTCAT 3199818 Query 131240 TACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGAT 131299 ||||| || || ||| | || ||| ||||||||||||||||| ||||| ||||||||| Sbjct 3199817 TACGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGGAGAGCTGGTCGTGAT 3199758 Query 131300 GG 131301 || Sbjct 3199757 GG 3199756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740574332626092