Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquila_20chrysaetos_20canadensis_20[refseq_20GCF_5F000766835.1_20201
4-10-14] 1,142 sequences; 1,192,743,076 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq80 170 4e-37
seq36 143 5e-29
seq18 118 2e-21
>seq80
Length=5371318
Score = 170 bits (188), Expect = 4e-37
Identities = 175/229 (76%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || ||||| ||||| || | ||||| || ||||| ||||| || || || ||||
Sbjct 4804746 TACCACCCCTCAAGCGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAG 4804805
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| || | | || ||||| || || || ||||||||||| || || || ||||| || |
Sbjct 4804806 ACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGG 4804865
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || |||||||| || || ||||| || || ||||| ||||| || ||| | || || |
Sbjct 4804866 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAA 4804925
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||| ||||| |||||||| |||| ||||| ||||| ||||||||
Sbjct 4804926 CTTCCAGGGTTATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4804974
>seq36
Length=10026654
Score = 143 bits (158), Expect = 5e-29
Identities = 153/202 (76%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 82610 CAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTT 82669
||| || ||||| ||||| || || || || || || | | ||| ||||| || || ||
Sbjct 5148314 CAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAGCTGCTT 5148255
Query 82670 TCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGC 82729
||||||||||| || || || ||||| || || || |||||||| || || ||||| ||
Sbjct 5148254 GCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGC 5148195
Query 82730 TTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAA 82789
|| ||||| ||||| || ||| | ||||| || || | || || |||||||| ||||
Sbjct 5148194 CTTGACATTCTCAATGGTGTCACTGGGTTCAACCTCAAGGGTGATGGTCTTGCCAGTCAG 5148135
Query 82790 CGTCTTTACAAATATCTGCATT 82811
||||| ||||| |||||||||
Sbjct 5148134 GGTCTTCACAAAGATCTGCATT 5148113
>seq18
Length=13915978
Score = 118 bits (130), Expect = 2e-21
Identities = 124/163 (76%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 60149 GCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATA 60208
|| ||||||||||| ||| | |||||||| || ||||| || |||||| | || |||||
Sbjct 5248138 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAATATTTGGATACGATATTCTTCATC 5248197
Query 60209 CTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTT 60268
|| ||||| || ||||| || ||||||| | || || ||||| ||||| || |||||
Sbjct 5248198 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 5248257
Query 60269 ACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311
|| || | ||| | || ||||| ||| |||| || || ||||
Sbjct 5248258 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 5248300
Score = 96.9 bits (106), Expect = 7e-15
Identities = 101/133 (76%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 60310 AGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATTATGG 60369
||| ||||||||||||||| ||||| | || || ||||| |||||||| | ||||||||
Sbjct 5250464 AGCTTTTTTCGGAGCTCAGATGAATGCATTTATTCATGTCATTATGTACATGTATTATGG 5250523
Query 60370 TATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTATCTTACTAT 60429
| || || ||||| |||| ||| | || || | |||||||| || || | || ||
Sbjct 5250524 ATTAGCCGCCTGTGGCCCTAAATTTCAGAAATACCTGTGGTGGAAACGATACTTGACCAT 5250583
Query 60430 AATGCAATTGTTA 60442
| |||||||| ||
Sbjct 5250584 ACTGCAATTGGTA 5250596
Score = 87.8 bits (96), Expect = 4e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 60443 CAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGTCCGTTTCCA 60502
|| |||||| | |||| || || || || |||| ||||| || |||||||| || ||
Sbjct 5251105 CAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTTCCCT 5251164
Query 60503 AAATGGACACAATGGTCAGTTATCATTTATTCTATTACTTTTATATTACTGTTTGGTAAC 60562
||||||| || ||| || || | ||| || | || || ||||| ||||||||||||
Sbjct 5251165 AAATGGATGCACTGGGGTGTAATTTTCTATGCTGTCACCTTCATATTCCTGTTTGGTAAC 5251224
Query 60563 TTCTATTTTAGAACATACAAG 60583
||||| | | | ||||| |||
Sbjct 5251225 TTCTACTATCGGACATATAAG 5251245
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981812834027138
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |