Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquila_20chrysaetos_20canadensis_20[refseq_20GCF_5F000766835.1_20201 4-10-14] 1,142 sequences; 1,192,743,076 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq36 127 2e-24 seq80 120 3e-22 seq49 100 3e-16 seq142 84.2 2e-11 >seq36 Length=10026654 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||| || ||||| || ||||| ||| || ||| ||| | || || |||||||||| Sbjct 5148311 GGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCA-TCTTCCAGCTGCTTGC 5148253 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| |||||| || || || |||||||||||||| |||||| || Sbjct 5148252 CAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCT 5148193 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| ||||| |||| || || || | ||||| ||| ||||| ||||| | Sbjct 5148192 TGACATTCTCAATGGTGTCACTGGGTTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGG 5148133 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 5148132 TCTTCACAAAGATCTGCAT 5148114 >seq80 Length=5371318 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | |||||| || ||||| || ||||| || || ||| | || || ||||| Sbjct 4804771 ATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTG 4804830 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || | || |||| |||||| || || || |||||||||||||| |||||| Sbjct 4804831 CTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTT 4804890 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||||| | ||||| ||||| ||||||| || || | ||| | ||| ||||| || Sbjct 4804891 GGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTTATGGTCTTGCCAGT 4804950 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || || |||||||| Sbjct 4804951 CAGGGTCTTCACAAAGATCTGCAT 4804974 >seq49 Length=8140862 Score = 100 bits (110), Expect = 3e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 148866 TACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925 ||||| || || || | |||||||||||||||||||| || | ||||| |||||| Sbjct 7588639 TACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTCCCTAAGTTCTGCTGATTG 7588580 Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTC 148975 ||||| | |||||| | ||| |||||||||||||||||| |||||| || Sbjct 7588579 CTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGTGTGCCAGTCTC 7588530 >seq142 Length=2100711 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 133557 CCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCG 133616 |||||||| || |||||| ||||| | ||| | ||||||| |||||||||| || Sbjct 2014200 CCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATCGTGTCGTTGGGCTCCACCTCC 2014259 Query 133617 ACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | ||||| |||||| || ||||| || || || ||||||||||| Sbjct 2014260 AGGGTGATGGTTTTCCCCGTCAGCGTCTTGACAAAAATCTGCAT 2014303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483413899168080