Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquila_20chrysaetos_20canadensis_20[refseq_20GCF_5F000766835.1_20201
4-10-14] 1,142 sequences; 1,192,743,076 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq23 123 3e-23
seq4 116 4e-21
>seq23
Length=12524172
Score = 123 bits (136), Expect = 3e-23
Identities = 527/825 (64%), Gaps = 22/825 (3%)
Strand=Plus/Minus
Query 162181 CCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCG 162240
|| || || || || || || || || || || |||||||| || || | || || | |
Sbjct 3182517 CCAAAAACACAGACAGAGCGAACATGAACTCCACTGCACGGTGGGTAGGGTGCACCTTTG 3182458
Query 162241 TCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAG 162300
||| || || || |||| |||||||| || ||||| | | || | |||||| ||
Sbjct 3182457 GACACGTCACCTTCAAAGTACTGCCACTTGACAAACCTTGCCAGTGCATTCATGTCAGAA 3182398
Query 162301 GTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGT 162359
|||||||||| |||| || | || || || || || | || | |||||| | ||
Sbjct 3182397 ACATCGTACTTGT-CACTAGAAGAAACTGCACCTGGGACTTCAGGTATTCTCTGAATTGT 3182339
Query 162360 AGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGAC 162419
||||| |||| || ||||| || || || || || | |||||| ||||||| | |
Sbjct 3182338 TGCCCATAGGTACTCATCTGGGCTGTAAGTGTCTTTTGCCCACTCAATGAACT---TAAG 3182282
Query 162420 CGTTTTATCG---TATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCT 162476
||||| | | ||| | ||| | | ||| | || | ||| || || ||
Sbjct 3182281 TATTTTACTGCTTTCTAGTACGTATTCTGCAAATCTTCTGCTAACTACAAAATAGGCACT 3182222
Query 162477 ACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTAC 162536
||||||||| | || | | | ||| || | | ||||||| || ||||| ||
Sbjct 3182221 ACCAGAAAAAATTGGAGTACTGAGAGGTGGTAGTTGTTTGTCTATGCCTGTGTTCTTTAT 3182162
Query 162537 CATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGG-- 162594
| || || | | | | || || ||||||| | ||| || || ||
Sbjct 3182161 TTTACCATCAATAATCTCATGGTGTTTTTTCCACCTTACTTCTTTA----TAAACAGGCA 3182106
Query 162595 --TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTA 162652
| ||| || || | ||||| ||| | || || | | || || ||
Sbjct 3182105 TTTTTTCTGTTTCCAAGCTGTTTTCACCTTTAAGAGCTTTTAATTTCTCTACTATTTCCT 3182046
Query 162653 GATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGC 162712
| |||||||| | |||||||| ||| ||||| || || | |||||||| || |
Sbjct 3182045 GGTTGGTCTTTATAGGAAAGTCCAGGCCACAGAGGTTTATTAGGTATTTCCAGTTTGAAC 3181986
Query 162713 TGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGT 162772
| || ||| ||||| | | ||||| | || ||||| || | ||||| || || |
Sbjct 3181985 TTCTTCTGTAGAGATCTTTCATGCAGTTAATGTCTGCCTGCACCCTGCTCCATGAAGCAT 3181926
Query 162773 ACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCA 162832
| || || ||||| ||| ||| | ||||||||| || ||||| || ||||| |||
Sbjct 3181925 ATACAACACTCTCTAACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCT 3181866
Query 162833 TCACGGCCAGTGAGAACA---TCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGAT 162889
|||| || || | || | || || ||| | || || || | ||||| | ||
Sbjct 3181865 TCACAGC-AGCAAAAAAAGATTCTGGAGACTTTT--TGTCAACATGAATACAGTAAAAAT 3181809
Query 162890 TCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCA 162949
|||||||||| ||||| | || || | ||| || | |||||| || || || | ||||
Sbjct 3181808 TCTGAGGGGCATAGATTGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCA 3181749
Query 162950 CGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994
| || || || || || || || || || || || |||||||
Sbjct 3181748 CTATTGAGTAAGCAATTGGAAATTCTGCTTCTTCATTGCTGAGAG 3181704
>seq4
Length=24539817
Score = 116 bits (128), Expect = 4e-21
Identities = 257/378 (68%), Gaps = 8/378 (2%)
Strand=Plus/Plus
Query 162610 CTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGA 162669
||||| || ||| || ||||||| ||| || ||||| | |||||||| | |||
Sbjct 5979774 CTGTTCCGCCCCTGCAGCACCTTCAGGGCACGGACGATCTCGACGTTGGTCTTGATGGGG 5979833
Query 162670 AAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTA-CAGATC 162728
|| |||||||||||| || | || || |||| | | | || | | ||| ||
Sbjct 5979834 AAATCGGTGCCGCAGGTGTTGAGGACGTAGCGCCACGGCATGGGGC-TCTGCAGCAGGTC 5979892
Query 162729 CTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCT-CCA 162787
||| | ||||| || || ||||| | || ||| || |||||||| || |||| |||
Sbjct 5979893 CTGCATGCAGTTGAGGTCAGCCTGCAGCCGGGACCAGGAGGCGTACACCAC-CTCTTCCA 5979951
Query 162788 ACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGAGA 162847
| | | || |||||||| ||| ||| || | || || || ||||||| ||
Sbjct 5979952 AGCGGCTCGCCACAAAGACGTTGGGGAAGCAGGCCACGATGGCCCGCACGGCCTCCTGGA 5980011
Query 162848 A--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGAT 162905
| | | || | || || || ||||| |||||||| | ||||| ||||||||||
Sbjct 5980012 AGGCGGCCGGA--GACTTGCTGTCGACGTGGACGCAGTAGACGTTCTGGGGGGCGTAGAG 5980069
Query 162906 GGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCTAT 162965
|| | ||| | | ||| |||||||| || || | ||| | || || || || || ||
Sbjct 5980070 GGAGCGCAGGAGCCGCTCAAACATCTCGATTTTGTTGTGGATGACCATGGAGTAGGCGAT 5980129
Query 162966 GGGGAACTCAGCCTCCTC 162983
||||||||| ||||||||
Sbjct 5980130 GGGGAACTCCGCCTCCTC 5980147
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578423742883200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |