Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquila_20chrysaetos_20canadensis_20[refseq_20GCF_5F000766835.1_20201 4-10-14] 1,142 sequences; 1,192,743,076 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq23 123 3e-23 seq4 116 4e-21 >seq23 Length=12524172 Score = 123 bits (136), Expect = 3e-23 Identities = 527/825 (64%), Gaps = 22/825 (3%) Strand=Plus/Minus Query 162181 CCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCG 162240 || || || || || || || || || || || |||||||| || || | || || | | Sbjct 3182517 CCAAAAACACAGACAGAGCGAACATGAACTCCACTGCACGGTGGGTAGGGTGCACCTTTG 3182458 Query 162241 TCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAG 162300 ||| || || || |||| |||||||| || ||||| | | || | |||||| || Sbjct 3182457 GACACGTCACCTTCAAAGTACTGCCACTTGACAAACCTTGCCAGTGCATTCATGTCAGAA 3182398 Query 162301 GTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGT 162359 |||||||||| |||| || | || || || || || | || | |||||| | || Sbjct 3182397 ACATCGTACTTGT-CACTAGAAGAAACTGCACCTGGGACTTCAGGTATTCTCTGAATTGT 3182339 Query 162360 AGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGAC 162419 ||||| |||| || ||||| || || || || || | |||||| ||||||| | | Sbjct 3182338 TGCCCATAGGTACTCATCTGGGCTGTAAGTGTCTTTTGCCCACTCAATGAACT---TAAG 3182282 Query 162420 CGTTTTATCG---TATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCT 162476 ||||| | | ||| | ||| | | ||| | || | ||| || || || Sbjct 3182281 TATTTTACTGCTTTCTAGTACGTATTCTGCAAATCTTCTGCTAACTACAAAATAGGCACT 3182222 Query 162477 ACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTAC 162536 ||||||||| | || | | | ||| || | | ||||||| || ||||| || Sbjct 3182221 ACCAGAAAAAATTGGAGTACTGAGAGGTGGTAGTTGTTTGTCTATGCCTGTGTTCTTTAT 3182162 Query 162537 CATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGG-- 162594 | || || | | | | || || ||||||| | ||| || || || Sbjct 3182161 TTTACCATCAATAATCTCATGGTGTTTTTTCCACCTTACTTCTTTA----TAAACAGGCA 3182106 Query 162595 --TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTA 162652 | ||| || || | ||||| ||| | || || | | || || || Sbjct 3182105 TTTTTTCTGTTTCCAAGCTGTTTTCACCTTTAAGAGCTTTTAATTTCTCTACTATTTCCT 3182046 Query 162653 GATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGC 162712 | |||||||| | |||||||| ||| ||||| || || | |||||||| || | Sbjct 3182045 GGTTGGTCTTTATAGGAAAGTCCAGGCCACAGAGGTTTATTAGGTATTTCCAGTTTGAAC 3181986 Query 162713 TGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGT 162772 | || ||| ||||| | | ||||| | || ||||| || | ||||| || || | Sbjct 3181985 TTCTTCTGTAGAGATCTTTCATGCAGTTAATGTCTGCCTGCACCCTGCTCCATGAAGCAT 3181926 Query 162773 ACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCA 162832 | || || ||||| ||| ||| | ||||||||| || ||||| || ||||| ||| Sbjct 3181925 ATACAACACTCTCTAACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCT 3181866 Query 162833 TCACGGCCAGTGAGAACA---TCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGAT 162889 |||| || || | || | || || ||| | || || || | ||||| | || Sbjct 3181865 TCACAGC-AGCAAAAAAAGATTCTGGAGACTTTT--TGTCAACATGAATACAGTAAAAAT 3181809 Query 162890 TCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCA 162949 |||||||||| ||||| | || || | ||| || | |||||| || || || | |||| Sbjct 3181808 TCTGAGGGGCATAGATTGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCA 3181749 Query 162950 CGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994 | || || || || || || || || || || || ||||||| Sbjct 3181748 CTATTGAGTAAGCAATTGGAAATTCTGCTTCTTCATTGCTGAGAG 3181704 >seq4 Length=24539817 Score = 116 bits (128), Expect = 4e-21 Identities = 257/378 (68%), Gaps = 8/378 (2%) Strand=Plus/Plus Query 162610 CTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGA 162669 ||||| || ||| || ||||||| ||| || ||||| | |||||||| | ||| Sbjct 5979774 CTGTTCCGCCCCTGCAGCACCTTCAGGGCACGGACGATCTCGACGTTGGTCTTGATGGGG 5979833 Query 162670 AAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTA-CAGATC 162728 || |||||||||||| || | || || |||| | | | || | | ||| || Sbjct 5979834 AAATCGGTGCCGCAGGTGTTGAGGACGTAGCGCCACGGCATGGGGC-TCTGCAGCAGGTC 5979892 Query 162729 CTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCT-CCA 162787 ||| | ||||| || || ||||| | || ||| || |||||||| || |||| ||| Sbjct 5979893 CTGCATGCAGTTGAGGTCAGCCTGCAGCCGGGACCAGGAGGCGTACACCAC-CTCTTCCA 5979951 Query 162788 ACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGAGA 162847 | | | || |||||||| ||| ||| || | || || || ||||||| || Sbjct 5979952 AGCGGCTCGCCACAAAGACGTTGGGGAAGCAGGCCACGATGGCCCGCACGGCCTCCTGGA 5980011 Query 162848 A--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGAT 162905 | | | || | || || || ||||| |||||||| | ||||| |||||||||| Sbjct 5980012 AGGCGGCCGGA--GACTTGCTGTCGACGTGGACGCAGTAGACGTTCTGGGGGGCGTAGAG 5980069 Query 162906 GGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCTAT 162965 || | ||| | | ||| |||||||| || || | ||| | || || || || || || Sbjct 5980070 GGAGCGCAGGAGCCGCTCAAACATCTCGATTTTGTTGTGGATGACCATGGAGTAGGCGAT 5980129 Query 162966 GGGGAACTCAGCCTCCTC 162983 ||||||||| |||||||| Sbjct 5980130 GGGGAACTCCGCCTCCTC 5980147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578423742883200