Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquila_20chrysaetos_20canadensis_20[refseq_20GCF_5F000766835.1_20201 4-10-14] 1,142 sequences; 1,192,743,076 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq36 127 5e-24 seq80 123 6e-23 seq68 89.7 1e-12 seq51 84.2 5e-11 >seq36 Length=10026654 Score = 127 bits (140), Expect = 5e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 225514 AGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTC 225573 || |||||||| || |||| ||||| |||| || || | |||||||| |||||||| Sbjct 5148313 AGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAGCTGCTTG 5148254 Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||| ||||| || | || || || || ||||| ||||||||||| |||||||| | Sbjct 5148253 CCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCC 5148194 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || ||| || |||||||| || ||| || || | ||||| |||||||| |||| Sbjct 5148193 TTGACATTCTCAATGGTGTCACTGGGTTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGG 5148134 Query 225694 GTTTTTATGAACACTTGCATTTT 225716 || || | || | |||||||| Sbjct 5148133 GTCTTCACAAAGATCTGCATTTT 5148111 >seq80 Length=5371318 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||| || || |||||||| || |||| ||||| || | || || | |||||| Sbjct 4804762 CAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 4804821 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || || || || ||||| ||||||||||| Sbjct 4804822 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTC 4804881 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| ||| || |||||||| || || || || | || || || Sbjct 4804882 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTTATGGT 4804941 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 4804942 CTTGCCAGTCA 4804952 >seq68 Length=6120357 Score = 89.7 bits (98), Expect = 1e-12 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| | ||||| || | | || || |||||||| || || || ||||| | || || Sbjct 3676483 CCAAATCTACAATGTAGTCGTCACTGCCCATGCCTTCGTAATAATCTTCTTCATGGTCAT 3676424 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 || |||| || || ||||||||||| ||| | || || | || || | |||||||| Sbjct 3676423 ACCAATTATAATCGGAGGTTTCGGAAACTGACTTGTCCCGCTCATAATCAGCGCTCCTGA 3676364 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTT 7724 || || |||||| | | ||||| || || || ||| |||| || || ||||| Sbjct 3676363 CATAGCCTTTCCACGCATAAACAACATGAGCTTCTGACTACTCCCTCCATCCTT 3676310 >seq51 Length=7971058 Score = 84.2 bits (92), Expect = 5e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 7556 TTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGG 7615 ||||||| || | | || || ||||||||||| || || ||||| | ||||| ||| Sbjct 6161875 TTTACAATGTAGTCGTCACTGCCCATGCCTTTGTAATAATCTTCTTCATGGTTATACCGA 6161934 Query 7616 TTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGG 7675 |||| | || || |||||||| ||| | || || | || ||||||||||| | || | Sbjct 6161935 TTATAACCGGGGGCTTCGGAAACTGACTTGTCCCACTTATAATTGGTGCTCCCAACATAG 6161994 Query 7676 CTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTT 7724 |||| ||| | || || ||| | || ||| |||| || | ||||| Sbjct 6161995 CTTTCCCACACATAAATAACATACGCTTCTGACTACTCCCCCGATCCTT 6162043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192513751032548