Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquila_20chrysaetos_20canadensis_20[refseq_20GCF_5F000766835.1_20201 4-10-14] 1,142 sequences; 1,192,743,076 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq55 87.8 1e-12 seq39 84.2 2e-11 >seq55 Length=7031396 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || |||||||||||||| |||| || | ||| || | | ||| | |||||| || || Sbjct 6882431 TTGAGCTCCCTGCTGAGCACTATATTAATTCTGCCTTTTAAAGGACGATTCTTCTCAGGA 6882372 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || ||| |||||||||||| | ||||| |||||| Sbjct 6882371 ATGGAGAACCAGGTTTTTTTACCCATTATCAGTGCATTCTGTTTACCT 6882324 >seq39 Length=9497852 Score = 84.2 bits (92), Expect = 2e-11 Identities = 119/162 (73%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT-GTGCTCGAA 30075 || |||||||||||||| || || || ||||||| || ||||| || || ||||| ||| Sbjct 343660 AAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCCTCTCTGGTGCT-GAA 343718 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| ||| |||| || || | || || || || ||||| ||||| || || || | Sbjct 343719 ACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCATCCCAAATCTTCACACCTTTTGC 343778 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG 30177 ||||||||||| | || || || || || || || ||||| Sbjct 343779 AGAGAGCTCTTTAGCATTCGTAGAACC-CT-ACAAAACACAG 343818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406157546969812