Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquila_20chrysaetos_20canadensis_20[refseq_20GCF_5F000766835.1_20201 4-10-14] 1,142 sequences; 1,192,743,076 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq6 107 3e-18 seq20 104 3e-17 seq49 86.0 9e-12 >seq6 Length=21260008 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | ||| || || || || || |||||||| || || | ||| || Sbjct 17300070 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 17300011 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||||||||| || || || || |||||||| |||||||| || || || || || Sbjct 17300010 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAAGCA 17299951 Query 46774 ACAAGTCTCTCTCC 46787 || | |||||| || Sbjct 17299950 ACCACTCTCTCACC 17299937 >seq20 Length=13035929 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||||||||| || | ||| |||||||| ||||| |||||||||| ||| | || || Sbjct 5722764 TCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCCCTTTTCTTC 5722823 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||| || | || ||||| ||||||||||| || ||||| || || || || || Sbjct 5722824 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGCT 5722883 Query 46774 AC 46775 || Sbjct 5722884 AC 5722885 Score = 86.0 bits (94), Expect = 9e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 46324 GACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCT 46383 ||||| |||||||| | || ||||||||||| || ||||| || ||||| || |||||| Sbjct 5721461 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 5721520 Query 46384 TCCAATGATATATTTTCCATAAAATCAAACGGATT 46418 || | || || |||||||| || ||||| ||||| Sbjct 5721521 TCTAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 5721555 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||||| || || || || | |||||| |||||||||||||| || ||||| || || Sbjct 5724889 ATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGC 5724948 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995 ||||| || || || ||||| | ||||| || || ||||| ||| Sbjct 5724949 AATCTGGAAGCCATAGAAACAGCGAGCTTCTGTGATTTGTACTTCT 5724994 >seq49 Length=8140862 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || |||||||| || || || || || ||||| || ||||| ||||||| || |||||| Sbjct 7585067 GTGCCTGCATTGAATAACGTGGGGGAGGCATGGGTAAACCACCTTTCAGACAGAAGATTG 7585008 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || |||||||| | || || || || || || || || || | || | ||||||| Sbjct 7585007 TAAGTTTCAATTGCAGCATCAATGTCATTTTTGTGGATCCCCACTGATACCCTCATCAAC 7584948 Query 77114 ATATGCTGAGGTCGTTC 77130 ||||| ||||| || || Sbjct 7584947 ATATGTTGAGGACGCTC 7584931 Score = 84.2 bits (92), Expect = 3e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 76597 AACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACG 76656 ||| || ||||| ||||||||||| ||||| || |||| || || |||| || || | Sbjct 7587299 AACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTG 7587240 Query 76657 TTCTTCATTTCCTGTATTCTT-TTTAAGATCTAGGAACTCCATAATATCAGAATGCCATG 76715 ||||| || || || ||||| |||||| || || ||||| | || || ||||||||| Sbjct 7587239 CTCTTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATG 7587181 Query 76716 GTTCTAGATATATCGCCATAACACCCGGTC 76745 | || || || || || | | | || |||| Sbjct 7587180 GCTCCAGGTAGATGGCAAAAGCCCCAGGTC 7587151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712924222861440