Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquila_20chrysaetos_20canadensis_20[refseq_20GCF_5F000766835.1_20201
4-10-14] 1,142 sequences; 1,192,743,076 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq6 107 3e-18
seq20 104 3e-17
seq49 86.0 9e-12
>seq6
Length=21260008
Score = 107 bits (118), Expect = 3e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713
|||||||| ||||| | ||| || || || || || |||||||| || || | ||| ||
Sbjct 17300070 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 17300011
Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773
|||||||||||||| || || || || |||||||| |||||||| || || || || ||
Sbjct 17300010 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAAGCA 17299951
Query 46774 ACAAGTCTCTCTCC 46787
|| | |||||| ||
Sbjct 17299950 ACCACTCTCTCACC 17299937
>seq20
Length=13035929
Score = 104 bits (114), Expect = 3e-17
Identities = 96/122 (79%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713
||||||||||| || | ||| |||||||| ||||| |||||||||| ||| | || ||
Sbjct 5722764 TCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCCCTTTTCTTC 5722823
Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773
|||||||| || | || ||||| ||||||||||| || ||||| || || || || ||
Sbjct 5722824 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGCT 5722883
Query 46774 AC 46775
||
Sbjct 5722884 AC 5722885
Score = 86.0 bits (94), Expect = 9e-12
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 46324 GACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCT 46383
||||| |||||||| | || ||||||||||| || ||||| || ||||| || ||||||
Sbjct 5721461 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 5721520
Query 46384 TCCAATGATATATTTTCCATAAAATCAAACGGATT 46418
|| | || || |||||||| || ||||| |||||
Sbjct 5721521 TCTAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 5721555
Score = 84.2 bits (92), Expect = 3e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949
|||||||| || || || || | |||||| |||||||||||||| || ||||| || ||
Sbjct 5724889 ATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGC 5724948
Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995
||||| || || || ||||| | ||||| || || ||||| |||
Sbjct 5724949 AATCTGGAAGCCATAGAAACAGCGAGCTTCTGTGATTTGTACTTCT 5724994
>seq49
Length=8140862
Score = 86.0 bits (94), Expect = 9e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053
|| |||||||| || || || || || ||||| || ||||| ||||||| || ||||||
Sbjct 7585067 GTGCCTGCATTGAATAACGTGGGGGAGGCATGGGTAAACCACCTTTCAGACAGAAGATTG 7585008
Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113
|| |||||||| | || || || || || || || || || | || | |||||||
Sbjct 7585007 TAAGTTTCAATTGCAGCATCAATGTCATTTTTGTGGATCCCCACTGATACCCTCATCAAC 7584948
Query 77114 ATATGCTGAGGTCGTTC 77130
||||| ||||| || ||
Sbjct 7584947 ATATGTTGAGGACGCTC 7584931
Score = 84.2 bits (92), Expect = 3e-11
Identities = 110/150 (73%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 76597 AACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACG 76656
||| || ||||| ||||||||||| ||||| || |||| || || |||| || || |
Sbjct 7587299 AACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTG 7587240
Query 76657 TTCTTCATTTCCTGTATTCTT-TTTAAGATCTAGGAACTCCATAATATCAGAATGCCATG 76715
||||| || || || ||||| |||||| || || ||||| | || || |||||||||
Sbjct 7587239 CTCTTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATG 7587181
Query 76716 GTTCTAGATATATCGCCATAACACCCGGTC 76745
| || || || || || | | | || ||||
Sbjct 7587180 GCTCCAGGTAGATGGCAAAAGCCCCAGGTC 7587151
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712924222861440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |