Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ara_20macao_20[genbank_20GCA_5F000400695.1_202013-06-26] 192,790 sequences; 1,204,700,227 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq11258 141 1e-28 seq20857 102 8e-17 seq33063 98.7 1e-15 seq148742 87.8 2e-12 seq17506 84.2 2e-11 >seq11258 Length=1071 Score = 141 bits (156), Expect = 1e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || || || ||| | Sbjct 35 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 94 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| |||||||| ||| | |||||| Sbjct 95 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAG 154 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| ||| ||||| |||||||| || | ||||||||| |||||||||| Sbjct 155 CAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAGGATGGGCGCACCCTGTCCGACTACAAC 214 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||||||||| |||| || ||||| ||| ||||| Sbjct 215 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGC 250 >seq20857 Length=58616 Score = 102 bits (112), Expect = 8e-17 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || |||||| |||||||||| || ||||||| ||||||||| |||||||| |||| || Sbjct 491 GGGATCCCCCCGGACCAGCAGCGCCTCATCTTCGCGGGCAAGCAGCTGGAGGACGGCCGG 432 Query 40852 ACCCTCAACGACTACAACATCCAGAA 40877 |||||| |||||||||||||||||| Sbjct 431 ACCCTCGCCGACTACAACATCCAGAA 406 >seq33063 Length=22908 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 |||||||| | || |||| ||| ||||| |||||||| |||| |||||||| ||| Sbjct 137 GACCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGACGCACCCTGTCTGAC 78 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||||||| |||| || ||||| ||| ||||| | || || ||| Sbjct 77 TACAACATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTCAGAGGTGGC 24 >seq148742 Length=4363 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| ||||| || || || || ||| ||||||||||||| || || || ||||||| Sbjct 376 TGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTT 435 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | ||||| ||||| || ||||||||| ||| || || || ||| | Sbjct 436 GGCTGAAGAAGAGGGGCCTGATGCCAGGGCTGACTTTCTCCAATGAACTTATTAGCAGAG 495 Query 117162 ACGAGG 117167 | |||| Sbjct 496 ATGAGG 501 >seq17506 Length=29135 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| || || | | |||||||||||||| || || |||||||| || ||||| ||| Sbjct 5643 GAGCCTCTTCTCAGAAAAAACCCCCGCCGGTTTGTCATCTTCCCCATCCAGTACCCAGAC 5584 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || ||| ||||||||| |||| |||| || || ||||| | || |||||| Sbjct 5583 ATATGGAAAATGTACAAACAGGCTCAGGCCTCCTTTTGGACTGCAGAAGAGGTG 5530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 513977586130400