Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ara_20macao_20[genbank_20GCA_5F000400695.1_202013-06-26] 192,790 sequences; 1,204,700,227 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq5349 161 7e-35 seq172252 158 8e-34 seq3380 109 4e-19 >seq5349 Length=25177 Score = 161 bits (178), Expect = 7e-35 Identities = 244/347 (70%), Gaps = 0/347 (0%) Strand=Plus/Plus Query 108276 GAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCT 108335 || |||| ||| |||||||| ||||| ||||| ||| |||||||||| || | |||| Sbjct 44 GAGTGGGCCAAGGACACCTACAGCCCTGACGAGCACGTCTGGGCCACGCTCAACCGTGTG 103 Query 108336 CCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCC 108395 || | |||| ||| | | || || ||||| || |||||||||||| || Sbjct 104 CCTGGTGTGCCCGGCGCCATGCCCCCGAACGACAAGTTCCAGCTCTCAGACATGAACTCC 163 Query 108396 ATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTAT 108455 | || | || ||||||||| |||||| ||||| || || || ||| ||||| || Sbjct 164 CTGCCCCGTCTGGTCAAGTGGGAGTACCTGGAGGGGGACACCAACAAGGGCGCGCCCTAC 223 Query 108456 GCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTAC 108515 | |||||| | || || | | | ||| ||||||| ||||||| || ||| || | Sbjct 224 CCGCCCTGCACCGGCCAGCACCAGCGCGCCGTCTGCATCTACGGGGTGGGCGACGTGCCC 283 Query 108516 TGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAAC 108575 ||||| |||||| | || ||||||||||| |||||||| ||||| |||||| || | Sbjct 284 TGGATGCTCCAGCAGCACCACCTCTTGGCCAACAAGTTCGACCCCTTGGTGGACGACGCC 343 Query 108576 GTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGG 108622 | | || || | || ||| |||| || || | |||| |||| || Sbjct 344 GCTATCCAATGTCTGGAGGAGCACCTGCGCCACAGGGCCCTCTACGG 390 >seq172252 Length=11173 Score = 158 bits (174), Expect = 8e-34 Identities = 201/277 (73%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 107760 GAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTG 107819 || ||||| ||||| || | |||| ||| |||||| | ||||| |||||| | ||| Sbjct 277 GAGCGGCTCCTGCGGTCCCTCTATGTCCCCCAGAACGTCTACTGCGTCCACATTGATAAC 218 Query 107820 AAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTC 107879 |||||||||| | ||| | || || || |||||| | ||||||||||||| ||| Sbjct 217 AAGTCCCCAGCCGCCTTCCAGGAAGCCGTGCGGGCCATCGTAGCCTGCTTCCCCAACGTC 158 Query 107880 TTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGAC 107939 || |||| || | ||| ||||| ||||||||||||||| | |||| || ||| Sbjct 157 TTTGTGGCGAGCCACCTGGAAGACGTGGTCTATGCCTCCTGGTCCCGGCTGCAGGCCGAC 98 Query 107940 CTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACA 107999 || ||||| ||| | ||| || | |||||| | |||| ||| | || | || || || Sbjct 97 CTCAACTGCATGCAGGACCTGTTGCAGAGCCCCATGCCCTGGCACTATGTCCTCAACACC 38 Query 108000 TGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGA 108036 ||||| || || |||||||| ||||| || || |||| Sbjct 37 TGCGGCACCGATTTCCCCATCAAGACGAACGCTGAGA 1 >seq3380 Length=591 Score = 109 bits (120), Expect = 4e-19 Identities = 237/348 (68%), Gaps = 10/348 (3%) Strand=Plus/Minus Query 107700 GAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTT 107759 |||||| | |||||||||||||||| ||| || || || || |||| | |||| Sbjct 422 GAAGAGGCCGCCTTCCCCATTGCCTACGTTATGACCGTGCACAAGGAGTTTGAGACCTTT 363 Query 107760 GAACGGCTGCTGCGAGCCGTGTA--TGCCCCTCAGAACATATACTGTGTCCACGTGGATG 107817 || ||||| | | || ||||| |||||| ||||||| ||||| |||||||||||| Sbjct 362 GAGCGGCTCTTCAGGGCAGTGTACATGCCCC--AGAACATCTACTGCATCCACGTGGATG 305 Query 107818 TGAAGTCCCCAG-AGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAAT 107876 ||| | || | |||| || | |||||| | | | | ||||||||||||| Sbjct 304 CCAAGGCACCGGCCCACTTCCATCG-GGCGGTGCGGCGCCTGCTGGACTGCTTCCCCAAT 246 Query 107877 GTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCT 107936 | |||| | ||| | ||| | |||||| |||| | | ||| | ||| ||| Sbjct 245 GCCTTCCTTGCCTCGCGGATGGAGCGGGTGGTCTATGGCGGCATCTCCCGCCTGCGGGCT 186 Query 107937 GACCTGAACTGTATGGAAGACTTGCT--CCAGAGCTCAGTGCCATGGAAGTACTTACTGA 107994 ||||| |||| ||| |||| |||| || || | ||||| ||| ||| | || | Sbjct 185 GACCTCCACTGCATGAGAGACCTGCTGGCCTCAG--CCGTGCCCTGGCGCTACCTGCTCA 128 Query 107995 ATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCC 108042 | || ||||| ||||||||| | |||||||| ||||| |||| Sbjct 127 ACACCTGCGGCCAGGACTTCCCCTTGAAGACCAACCGGGAGATAGTCC 80 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347450497832460