Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ara_20macao_20[genbank_20GCA_5F000400695.1_202013-06-26]
192,790 sequences; 1,204,700,227 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq148742 120 4e-22
seq64820 105 8e-18
seq38092 87.8 2e-12
seq17506 84.2 3e-11
>seq148742
Length=4363
Score = 120 bits (132), Expect = 4e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663
|||| ||||| ||||| | ||| || || || || || || ||||| ||||| | ||| |
Sbjct 501 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGCCCTGGCATCAGGCCCCTCTTCT 442
Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723
| ||||||||||| | ||| || || || ||||||||||| ||||| |||||||||||||
Sbjct 441 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 382
Query 33724 CAATAAGTCTCTCTCC 33739
||| | |||||| ||
Sbjct 381 CAACCACTCTCTCACC 366
>seq64820
Length=6338
Score = 105 bits (116), Expect = 8e-18
Identities = 96/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663
|||| |||||||| || | ||| |||||||| |||||||| ||||||| || | ||||
Sbjct 3454 CCTCATCTCTACTGATGAGTTCATTAGAAAAGGTGAGTCCAGGCATTAATCCTCTTTTTT 3395
Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723
| |||||||| || || || || || || || |||||||||||||| ||||| || || |
Sbjct 3394 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCGAAAG 3335
Query 33724 C 33724
|
Sbjct 3334 C 3334
>seq38092
Length=14860
Score = 87.8 bits (96), Expect = 2e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGT 63326
||||| ||||| |||||||||||||||||||| || | || || ||||| | || ||
Sbjct 13572 ACTCGCTTCATGAAGAGATCAGGAATCCAAAGCGCAAAGAAAAGGTCTCTGGCTCGTTGC 13513
Query 63327 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63386
|| || || || || ||||| || | || || ||| | | || || ||||||| ||
Sbjct 13512 TCTTCTTTCCCAGTGTTCTTCTTCAAGTCCAGAAACTCAAAGATGTCCAAATGCCAGGGC 13453
Query 63387 TCCAAGTATATGGCCATAACTCCAGG 63412
|||| ||| ||||| | | | |||||
Sbjct 13452 TCCAGGTAGATGGCAAAAGCCCCAGG 13427
>seq17506
Length=29135
Score = 84.2 bits (92), Expect = 3e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 33969 TTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 34028
|||||||| || ||||||||||||||||||||||| |||| ||||| ||||| |||
Sbjct 3826 TTTTCATTTACAATTCCATCACTGGCTGCAAAAAATGCCAGAACATGAGAAATAAAGTAT 3885
Query 34029 TTTTCGTCTGGTGTTAGTTTATTCCA 34054
||||| |||| | | || || |||||
Sbjct 3886 TTTTCATCTGCTTTCAGCTTGTTCCA 3911
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628299818311200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |