Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ara_20macao_20[genbank_20GCA_5F000400695.1_202013-06-26] 192,790 sequences; 1,204,700,227 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq148742 120 4e-22 seq64820 105 8e-18 seq38092 87.8 2e-12 seq17506 84.2 3e-11 >seq148742 Length=4363 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||| || || || || || || ||||| ||||| | ||| | Sbjct 501 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGCCCTGGCATCAGGCCCCTCTTCT 442 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||||||||| | ||| || || || ||||||||||| ||||| ||||||||||||| Sbjct 441 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 382 Query 33724 CAATAAGTCTCTCTCC 33739 ||| | |||||| || Sbjct 381 CAACCACTCTCTCACC 366 >seq64820 Length=6338 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| |||||||| || | ||| |||||||| |||||||| ||||||| || | |||| Sbjct 3454 CCTCATCTCTACTGATGAGTTCATTAGAAAAGGTGAGTCCAGGCATTAATCCTCTTTTTT 3395 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | |||||||| || || || || || || || |||||||||||||| ||||| || || | Sbjct 3394 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCGAAAG 3335 Query 33724 C 33724 | Sbjct 3334 C 3334 >seq38092 Length=14860 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGT 63326 ||||| ||||| |||||||||||||||||||| || | || || ||||| | || || Sbjct 13572 ACTCGCTTCATGAAGAGATCAGGAATCCAAAGCGCAAAGAAAAGGTCTCTGGCTCGTTGC 13513 Query 63327 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63386 || || || || || ||||| || | || || ||| | | || || ||||||| || Sbjct 13512 TCTTCTTTCCCAGTGTTCTTCTTCAAGTCCAGAAACTCAAAGATGTCCAAATGCCAGGGC 13453 Query 63387 TCCAAGTATATGGCCATAACTCCAGG 63412 |||| ||| ||||| | | | ||||| Sbjct 13452 TCCAGGTAGATGGCAAAAGCCCCAGG 13427 >seq17506 Length=29135 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 33969 TTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 34028 |||||||| || ||||||||||||||||||||||| |||| ||||| ||||| ||| Sbjct 3826 TTTTCATTTACAATTCCATCACTGGCTGCAAAAAATGCCAGAACATGAGAAATAAAGTAT 3885 Query 34029 TTTTCGTCTGGTGTTAGTTTATTCCA 34054 ||||| |||| | | || || ||||| Sbjct 3886 TTTTCATCTGCTTTCAGCTTGTTCCA 3911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628299818311200