Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ara_20macao_20[genbank_20GCA_5F000400695.1_202013-06-26] 192,790 sequences; 1,204,700,227 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq148742 114 2e-20 seq11339 111 2e-19 seq188833 109 7e-19 seq38092 87.8 2e-12 >seq148742 Length=4363 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| ||||| || || || || ||||| ||||| | ||| | Sbjct 501 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGCCCTGGCATCAGGCCCCTCTTCT 442 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 441 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 382 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | |||||| || Sbjct 381 CAACCACTCTCTCACC 366 >seq11339 Length=42142 Score = 111 bits (122), Expect = 2e-19 Identities = 143/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 9228 TATTTCTTATTAGATACTTCCAA-AAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 ||||| |||||| | | |||| |||| | | || |||| ||||||||||||||| || Sbjct 41028 TATTTTTTATTAAACGCCTCCAGTAAGC-GCAGTAGGTGCAGGAACAGATTGATGATGTC 41086 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 |||||||| ||||| | || | ||||| |||||||| || | || || || || | Sbjct 41087 CAAGTAGAGGTTGATTGCAGCCAGTACATACTCTTCAGGGGATAATTTGTGCATCAGCAA 41146 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 || |||||||| |||| ||||| ||||| | ||| || ||| ||||| | |||| Sbjct 41147 ATGAGTGTCATAAATAACAAATCCACAGAACAGAAGAGCTCCAGCAGCAGCAAACACCAA 41206 Query 9407 CTCCACTGTTTCACT 9421 ||| | ||| ||||| Sbjct 41207 CTCTATTGTCTCACT 41221 >seq188833 Length=7918 Score = 109 bits (120), Expect = 7e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 9456 AAAATCCACAAAGTAACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGT 9515 |||||| ||| | |||| | |||||||||| ||| ||||| ||||||||||| || Sbjct 326 AAAATCACCAATATGACAACATACCCTGCTCCAAATTTGCTGAAGTCTCTCTTTGACTGC 385 Query 9516 AGAGTATATGCAGTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGCATAACG 9575 | |||||||||||||| | ||||| || |||||||| || || || ||||||| ||| Sbjct 386 AAGGTATATGCAGTCAGCCCGAGAAATACGGCAGTAGTAAGAATAAAGGCTTGCAAGACG 445 Query 9576 ACATGCACATCATAGAAA 9593 | ||||||||||||| Sbjct 446 ATGGACACATCATAGAAA 463 >seq38092 Length=14860 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGT 66119 ||||| ||||| |||||||||||||||||||| || | || | ||||||| || || Sbjct 13572 ACTCGCTTCATGAAGAGATCAGGAATCCAAAGCGCAAAGAAAAGGTCTCTGGCTCGTTGC 13513 Query 66120 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGT 66179 || || || || || ||||| || | || || ||| | | || || ||||||| || Sbjct 13512 TCTTCTTTCCCAGTGTTCTTCTTCAAGTCCAGAAACTCAAAGATGTCCAAATGCCAGGGC 13453 Query 66180 TCCAAGTATATGGCCATAACTCCAGG 66205 |||| ||| ||||| | | | ||||| Sbjct 13452 TCCAGGTAGATGGCAAAAGCCCCAGG 13427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 656586685823600