Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ara_20macao_20[genbank_20GCA_5F000400695.1_202013-06-26] 192,790 sequences; 1,204,700,227 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq148742 129 8e-25 seq64820 116 5e-21 seq38092 96.9 5e-15 seq22601 84.2 3e-11 >seq148742 Length=4363 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| ||||| ||||| || || || || ||||| ||||| | ||| | Sbjct 501 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGCCCTGGCATCAGGCCCCTCTTCT 442 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||||||||| | ||||| || || ||||||||||| ||||| ||||| ||||||| Sbjct 441 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 382 Query 50102 CAACAAGTCTCTCTCC 50117 |||| | |||||| || Sbjct 381 CAACCACTCTCTCACC 366 >seq64820 Length=6338 Score = 116 bits (128), Expect = 5e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| |||||||| || ||||| || ||||| |||||||| ||||||| || | |||| Sbjct 3454 CCTCATCTCTACTGATGAGTTCATTAGAAAAGGTGAGTCCAGGCATTAATCCTCTTTTTT 3395 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | |||||||| || || ||||| || ||||| |||||||||||||| ||||| || || | Sbjct 3394 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCGAAAG 3335 Query 50102 CAAC 50105 | || Sbjct 3334 CTAC 3331 >seq38092 Length=14860 Score = 96.9 bits (106), Expect = 5e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||| ||||| |||||||||||||||||||| || | || || ||||||| || ||| Sbjct 13572 ACTCGCTTCATGAAGAGATCAGGAATCCAAAGCGCAAAGAAAAGGTCTCTGGCTCGTTGC 13513 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || || || || ||||| || | || || ||| | | || || ||||||| || Sbjct 13512 TCTTCTTTCCCAGTGTTCTTCTTCAAGTCCAGAAACTCAAAGATGTCCAAATGCCAGGGC 13453 Query 80059 TCCAAGTATATGGCCATAACTCCCGGTC 80086 |||| ||| ||||| | | | || |||| Sbjct 13452 TCCAGGTAGATGGCAAAAGCCCCAGGTC 13425 >seq22601 Length=11492 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| || ||||| ||||| || || || ||| || | || ||||| || ||||| | Sbjct 5415 TCCAGCCATAGAAGTGCATGCTGGTGAGCTTGCCGTAGTTGGGCTCTGCAATGTGGATGT 5356 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 | | || || || ||||||||||| ||||| |||||||| ||||| || | || || | Sbjct 5355 TGAGGGACTGGCTCTGATCGATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGACAGTTT 5296 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 | || | || ||||| | || || || | |||| | ||| || |||| Sbjct 5295 TCTGGGAGATCTCCCACACGGTCTTGTAGAGCTGCTTCAGATCATCCGGAA 5245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716537861975600