Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ara_20macao_20[genbank_20GCA_5F000400695.1_202013-06-26] 192,790 sequences; 1,204,700,227 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq148742 107 2e-18 seq64820 93.3 4e-14 >seq148742 Length=4363 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 |||||||| || || || || || || || || || || ||||| || || | || || Sbjct 499 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGCCCTGGCATCAGGCCCCTCTTCTTC 440 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | |||||||||||||||||| ||||||||||| || || ||||||||||| ||||| || Sbjct 439 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 380 Query 13295 ATCAACCTTTCACC 13308 | || || ||||| Sbjct 379 ACCACTCTCTCACC 366 >seq64820 Length=6338 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 ||||||||||| || || || || ||||| || || || ||||| | |||| |||||| Sbjct 3452 TCATCTCTACTGATGAGTTCATTAGAAAAGGTGAGTCCAGGCATTAATCCTCTTTTTTTC 3393 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | |||||| || | ||||| || || || || || |||||||| |||||||| || ||| Sbjct 3392 AGCCAAAAAATTGATGCAAAAGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCGAAAGCT 3333 Query 13295 A 13295 | Sbjct 3332 A 3332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429969751631580