Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ara_20macao_20[genbank_20GCA_5F000400695.1_202013-06-26]
192,790 sequences; 1,204,700,227 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq2241 158 2e-33
seq27807 129 8e-25
>seq2241
Length=39700
Score = 158 bits (174), Expect = 2e-33
Identities = 226/315 (72%), Gaps = 4/315 (1%)
Strand=Plus/Minus
Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738
|||| || | || ||||| ||||| || ||| | ||||| || ||| | | ||||
Sbjct 8011 GGAAAGCTGTGAAGGGACAGCCTTTCACATTGTTGCAGACGAGCTTCTGTAAGGATGCAG 7952
Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798
| |||| || |||| || || | ||| || |||||||| || |||||||| | ||||
Sbjct 7951 TATTGATTATTTCAAATCCAACTTTTCCACCAAAGGTGCTAGGCTTCCAGTACTCAGGGG 7892
Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858
||||||| | || ||||||| ||||| || || || || || || | ||| | ||
Sbjct 7891 AGCAGATAGCATTTCCCATGAGCCCTTTCAGAGAGAATGGTGCTCCAATCTCCACCATCG 7832
Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAA-TCCGGTGTACAACTCC 8917
| ||||| |||||||| || || |||| ||| | |||||| || | ||||| ||||
Sbjct 7831 TTTCACCAAAGATGGCACCTGGTCGTGGCTGTTCTA-CAAGAAGGCCTGGGTACAGCTCC 7773
Query 8918 ACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG-- 8975
| ||| || |||||||| ||||| | ||||| || || ||||| ||||||||||
Sbjct 7772 ATAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGCA 7713
Query 8976 TTTTATTAATaaaaa 8990
|| |||| ||||||
Sbjct 7712 ATTGATTAGTAAAAA 7698
Score = 131 bits (144), Expect = 2e-25
Identities = 174/242 (72%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681
||||||| ||| || || ||||| || || ||| ||| ||||| || || |||||||
Sbjct 5651 ATGAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCTGGGTGCTCCTGTTTCAGG 5592
Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741
| || || || | |||||||||||| ||||| || |||||||||||||| | || ||
Sbjct 5591 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCGTACATCATCAAGCCTGGG 5532
Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801
|||| ||||| |||| || || |||| | ||| | ||| || | | |||||
Sbjct 5531 ACCAAACCAAACACCTCCTGCCCAACAGAAAACTGCAAGTGTTCTGGTATGTGAGGAGGG 5472
Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861
|||||||| | |||| || || || | || ||||||||||| || ||||| |||
Sbjct 5471 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCAATCATC 5412
Query 9862 TG 9863
||
Sbjct 5411 TG 5410
>seq27807
Length=5744
Score = 129 bits (142), Expect = 8e-25
Identities = 172/239 (72%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 8702 TTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCAAACCCCACG 8761
|| |||||| ||| || || || || | ||| |||| || ||| |||| ||
Sbjct 4929 TTCACGTTGAGACACACGAGCTTCTTGAGCGATGCTGTCTTAACTATCTCAAAGCCAGTT 4870
Query 8762 TCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGG 8821
||||||| ||||| |||||||||||||| | |||||||||||| ||| | | |||
Sbjct 4869 GCTCCGCCAAAGGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCAAGGAGC 4810
Query 8822 CCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGA 8881
|| || |||||||| ||||| || | ||| | ||||| || || ||||| | |||||
Sbjct 4809 CCCTTCAGGGAAAATGGAGCTCCAATCTCCACCATGCTTTCCCCAAAGATTCCATTGGGT 4750
Query 8882 CGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAG 8940
|||| || || | || || || | || ||||||| ||| ||||||||||| || ||
Sbjct 4749 TGGGGTTTCTCAAGCAGCAAGCCTGGATAGAACTCCAGAGCATCGATGTCTCCATAGAG 4691
Score = 95.1 bits (104), Expect = 2e-14
Identities = 109/145 (75%), Gaps = 4/145 (3%)
Strand=Plus/Minus
Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 10086
|| ||||| |||||||| |||| |||||| | | || || || || ||| | |
Sbjct 1743 CTCACCCCGTGTCCCAGCGCTTTGGTGAAGCCGCGTCCCATCTTCCCGGAT--GTCTTGA 1686
Query 10087 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 10146
| |||||||| |||||||| ||| | || ||||||||||| | |||||||||||||||||
Sbjct 1685 AGAACTGGTGGGTGAAATGCTGGGCGAAGAAGGCAAACATCAGGTTGGTGCCCTGGGGAT 1626
Query 10147 CGGGAGTGAAGGTCCTCCGAAGAAG 10171
| | |||| ||||||| || ||
Sbjct 1625 CAGCTTTGAACTTCCTCCGCAGCAG 1601
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 706817343797600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |