Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ara_20macao_20[genbank_20GCA_5F000400695.1_202013-06-26] 192,790 sequences; 1,204,700,227 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq2241 158 2e-33 seq27807 129 8e-25 >seq2241 Length=39700 Score = 158 bits (174), Expect = 2e-33 Identities = 226/315 (72%), Gaps = 4/315 (1%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||| ||||| || ||| | ||||| || ||| | | |||| Sbjct 8011 GGAAAGCTGTGAAGGGACAGCCTTTCACATTGTTGCAGACGAGCTTCTGTAAGGATGCAG 7952 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| || |||| || || | ||| || |||||||| || |||||||| | |||| Sbjct 7951 TATTGATTATTTCAAATCCAACTTTTCCACCAAAGGTGCTAGGCTTCCAGTACTCAGGGG 7892 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 ||||||| | || ||||||| ||||| || || || || || || | ||| | || Sbjct 7891 AGCAGATAGCATTTCCCATGAGCCCTTTCAGAGAGAATGGTGCTCCAATCTCCACCATCG 7832 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAA-TCCGGTGTACAACTCC 8917 | ||||| |||||||| || || |||| ||| | |||||| || | ||||| |||| Sbjct 7831 TTTCACCAAAGATGGCACCTGGTCGTGGCTGTTCTA-CAAGAAGGCCTGGGTACAGCTCC 7773 Query 8918 ACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG-- 8975 | ||| || |||||||| ||||| | ||||| || || ||||| |||||||||| Sbjct 7772 ATAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGCA 7713 Query 8976 TTTTATTAATaaaaa 8990 || |||| |||||| Sbjct 7712 ATTGATTAGTAAAAA 7698 Score = 131 bits (144), Expect = 2e-25 Identities = 174/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| ||| || || ||||| || || ||| ||| ||||| || || ||||||| Sbjct 5651 ATGAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCTGGGTGCTCCTGTTTCAGG 5592 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || || || | |||||||||||| ||||| || |||||||||||||| | || || Sbjct 5591 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCGTACATCATCAAGCCTGGG 5532 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| ||||| |||| || || |||| | ||| | ||| || | | ||||| Sbjct 5531 ACCAAACCAAACACCTCCTGCCCAACAGAAAACTGCAAGTGTTCTGGTATGTGAGGAGGG 5472 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | |||| || || || | || ||||||||||| || ||||| ||| Sbjct 5471 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCAATCATC 5412 Query 9862 TG 9863 || Sbjct 5411 TG 5410 >seq27807 Length=5744 Score = 129 bits (142), Expect = 8e-25 Identities = 172/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 8702 TTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCAAACCCCACG 8761 || |||||| ||| || || || || | ||| |||| || ||| |||| || Sbjct 4929 TTCACGTTGAGACACACGAGCTTCTTGAGCGATGCTGTCTTAACTATCTCAAAGCCAGTT 4870 Query 8762 TCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGG 8821 ||||||| ||||| |||||||||||||| | |||||||||||| ||| | | ||| Sbjct 4869 GCTCCGCCAAAGGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCAAGGAGC 4810 Query 8822 CCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGA 8881 || || |||||||| ||||| || | ||| | ||||| || || ||||| | ||||| Sbjct 4809 CCCTTCAGGGAAAATGGAGCTCCAATCTCCACCATGCTTTCCCCAAAGATTCCATTGGGT 4750 Query 8882 CGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAG 8940 |||| || || | || || || | || ||||||| ||| ||||||||||| || || Sbjct 4749 TGGGGTTTCTCAAGCAGCAAGCCTGGATAGAACTCCAGAGCATCGATGTCTCCATAGAG 4691 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/145 (75%), Gaps = 4/145 (3%) Strand=Plus/Minus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 10086 || ||||| |||||||| |||| |||||| | | || || || || ||| | | Sbjct 1743 CTCACCCCGTGTCCCAGCGCTTTGGTGAAGCCGCGTCCCATCTTCCCGGAT--GTCTTGA 1686 Query 10087 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 10146 | |||||||| |||||||| ||| | || ||||||||||| | ||||||||||||||||| Sbjct 1685 AGAACTGGTGGGTGAAATGCTGGGCGAAGAAGGCAAACATCAGGTTGGTGCCCTGGGGAT 1626 Query 10147 CGGGAGTGAAGGTCCTCCGAAGAAG 10171 | | |||| ||||||| || || Sbjct 1625 CAGCTTTGAACTTCCTCCGCAGCAG 1601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 706817343797600