Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ara_20macao_20[genbank_20GCA_5F000400695.1_202013-06-26] 192,790 sequences; 1,204,700,227 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq141467 158 2e-34 seq144467 138 2e-28 seq12692 136 6e-28 seq180045 100 4e-17 >seq141467 Length=739 Score = 158 bits (174), Expect = 2e-34 Identities = 182/245 (74%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || || ||||| || ||||||||||| || || Sbjct 534 CGCCAAGCGCCACCGCAAGGTGCTCCGCGACAATATCCAGGGCATCACCAAGCCGGCCAT 475 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| ||||| || || ||||| | || || || ||||||| |||| Sbjct 474 CCGGCGCCTGGCTCGGCGTGGCGGCGTGAAGCGCATTTCGGGTCTGATCTATGAGGAGAC 415 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| |||||| | ||||| ||| ||| |||| |||||| || |||||| || Sbjct 414 GCGCGGTGTGTTGAAGGTGTTCCTGGAGAACGTGATCCGCGATGCTGTCACCTATACGGA 355 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| | ||||| ||||| | |||||| | || ||||| |||| || || || Sbjct 354 GCACGCTAAGAGGAAGACGGTCACAGCTATGGATGTGGTTTATGCTCTGAAGCGGCAGGG 295 Query 16672 CCGTA 16676 |||| Sbjct 294 ACGTA 290 >seq144467 Length=43936 Score = 138 bits (152), Expect = 2e-28 Identities = 187/261 (72%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || || || || ||||| || ||||||||||| || || Sbjct 15752 CGCCAAGCGGCACCGCAAAGTGCTGCGCGACAATATCCAGGGCATCACCAAGCCGGCCAT 15811 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| ||||| || || ||||| |||| || | |||| || |||| Sbjct 15812 CCGCCGCCTGGCTCGGCGTGGCGGTGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 15871 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| ||||| | ||| ||| |||| ||||| || ||| || || Sbjct 15872 GCGCGGCGTGTTGAAAGTCTTCTTGGAGAACGTGATCCGCGATGCCGTCACCTACACGGA 15931 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| | ||||| || ||| ||||||| | || ||||| |||| || || || Sbjct 15932 GCACGCTAAGAGGAAGACGGTGACCGCCATGGACGTGGTTTATGCTCTGAAGCGGCAGGG 15991 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | || || ||||| Sbjct 15992 ACGCACTCTCTACGGCTTTGG 16012 >seq12692 Length=1462 Score = 136 bits (150), Expect = 6e-28 Identities = 191/268 (71%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | | || || || || ||||| || ||||||||||| ||||| Sbjct 1428 CGCCAAGCGGCACCGGAAAGTGCTGCGCGACAATATCCAGGGCATCACCAAGCCGGCTAT 1369 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| ||||| || || ||||| |||| || | |||| || |||| Sbjct 1368 CCGCCGCCTGGCTCGGCGTGGCGGTGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 1309 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| ||||| | ||| ||| || | ||||||| || ||| || || Sbjct 1308 GCGCGGCGTGTTGAAAGTCTTCTTGGAGAACGTGATTCGTGATGCTGTCACCTACACGGA 1249 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| | ||||| | ||||| || |||| || || || Sbjct 1248 GCACGCCAAGAGGAAGACGGTGACCGCTATGGACGTGGTCTACGCTCTGAAGCGGCAGGG 1189 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || ||||| || ||||| Sbjct 1188 ACGCACCCTCTACGGTTTCGGCGGTTAA 1161 >seq180045 Length=8581 Score = 100 bits (110), Expect = 4e-17 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || || || || ||||| || ||||||||||| || || Sbjct 4195 CGCCAAGCGCCACCGCAAAGTGCTGCGCGACAATATCCAGGGCATCACCAAGCCGGCCAT 4254 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| ||||| || || ||||| |||| || | |||| || |||| Sbjct 4255 CCGCCGCCTGGCTCGGCGTGGCGGTGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 4314 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGC 16596 || | ||| ||||| |||| || ||| ||| |||| ||||| Sbjct 4315 GCGCGGTGTGTTGAAAGTCTTTCTAGAGAACGTGATCCGCGATGC 4359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78898930753470