Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ara_20macao_20[genbank_20GCA_5F000400695.1_202013-06-26] 192,790 sequences; 1,204,700,227 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq22601 118 2e-21 seq156245 100 5e-16 seq38092 91.5 3e-13 seq148742 87.8 3e-12 >seq22601 Length=11492 Score = 118 bits (130), Expect = 2e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 244322 CCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTA 244381 || |||||||| || ||||| || ||| ||||| || | || ||| |||| | Sbjct 1474 CCTTTGCTGACAGGAGAACCCTCATATGTCTCATAGGGTCCCTGCTCCTTGGCAAGCTCA 1415 Query 244382 CAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGC-G 244440 ||||| | || | || |||| ||||||||||| |||||| || ||||| | ||| | Sbjct 1414 CAGCTGGCTTCCAAAGCACCGTAATAGATGGTCTCAAAGATCTGCTGGTTCAAG-CGCTG 1356 Query 244441 GGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCAC 244500 ||||| | | ||||||| | ||||| |||||| | || ||||| |||||||| Sbjct 1355 GGCCTCGGGACTCTCAAAGGGGAACCTCATCAGGATGAAGGCATCTGCCAGGCCCTGCAC 1296 Query 244501 GCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGC 244537 |||||||||||||| | ||| ||| ||||||||||| Sbjct 1295 CCCGATGCCGATGGGACGGTGGCGCCTGTTGGAGCGC 1259 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 ||||| |||||||| || || || | ||| ||||| ||| ||| || ||||||||| Sbjct 3066 ACCTGGAACTCTCCTGAGAGGACTCTGCGTGTGTAGATGTTACTGGTGTAGGGCTCGATG 3007 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 || |||||||||| ||||| || ||| ||||| ||||| || || | || ||| Sbjct 3006 GATTCGTTGTTGCCCAGGATCTGAGCAGTGGAAGCAGTTGGCATTGGAGAAAGGAGAAGA 2947 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 |||||||| || || | ||| Sbjct 2946 CTGTTCCTGACACCATACCT 2927 >seq156245 Length=697 Score = 100 bits (110), Expect = 5e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 244706 ACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTG 244765 |||||||| | |||| |||| || || || || || ||||| ||||| ||||||||| Sbjct 381 ACCTCCTCTTTGCTGGTATACTCCACGATTTCTGTACACAGGTTGCTGCATTTGATGGTG 322 Query 244766 CCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCC 244825 ||||||| ||| || ||| ||| |||||||| ||| |||||||||||| |||| Sbjct 321 CCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTAGGGTGTG 262 Query 244826 CCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTG 244885 || ||||| ||| | | | || | || |||||| | | ||||| ||| |||| Sbjct 261 CCTGTCTCAGTCTGCGACTCAATGATGGAGTACCAGAGCTGCTGGGCCTTCACCACCCTG 202 Query 244886 CGAGCCTTGCCCTCTGCCTCGTAGC 244910 || | ||||| |||||||| Sbjct 201 CGCACACGGCCCTGCTTCTCGTAGC 177 >seq38092 Length=14860 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || ||||||||| || || ||||| || || ||| ||||| |||| | ||||| || Sbjct 13567 CTTCATGAAGAGATCAGGAATCCAAAGCGCAAAGAAAAGGTCTCTGGCTCGTTGCTCTTC 13508 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 |||||||||||| ||| |||| ||| ||||||| ||| | ||||||||||||| Sbjct 13507 TTTCCCAGTGTTCTTCTTCAAGTCCAGAAACTCAAAGATGTCCAAATGCCAGGGCTCCAG 13448 Query 245128 GTAGA 245132 ||||| Sbjct 13447 GTAGA 13443 >seq148742 Length=4363 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | || || || ||||||||||| ||||| |||| || Sbjct 366 GGTGAGAGAGTGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCT 425 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | || || ||||| ||| ||| || |||||| || || || ||||| || ||||| Sbjct 426 GCTATATTTTGGCTGAAGAAGAGGGGCCTGATGCCAGGGCTGACTTTCTCCAATGAACTT 485 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||| || |||| Sbjct 486 ATTAGCAGAGATGAGG 501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 942063460570400