Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ara_20macao_20[genbank_20GCA_5F000400695.1_202013-06-26] 192,790 sequences; 1,204,700,227 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq2241 149 9e-31 seq27807 127 3e-24 >seq2241 Length=39700 Score = 149 bits (164), Expect = 9e-31 Identities = 178/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || | ||| ||||| |||| |||||| ||| |||| || ||||| || ||||| || Sbjct 5651 ATGAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCTGGGTGCTCCTGTTTCAGG 5592 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 | || ||||||| ||||||||| ||||||||||| || ||||||||||| || || || Sbjct 5591 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCGTACATCATCAAGCCTGGG 5532 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || ||||||||||| || | ||| || | ||| ||| | || || | | || | Sbjct 5531 ACCAAACCAAACACCTCCTGCCCAACAGAAAACTGCAAGTGTTCTGGTATGTGAGGAGGG 5472 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966 || | ||| | |||| || || || || || || ||||||||||| || ||||| | | Sbjct 5471 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCAATCATC 5412 Query 9967 TG 9968 || Sbjct 5411 TG 5410 Score = 140 bits (154), Expect = 5e-28 Identities = 211/300 (70%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| || ||||||||| || | ||| ||| | || ||| | Sbjct 8011 GGAAAGCTGTGAAGGGACAGCCTTTCACATTGTTGCAGACGAGCTTCTGTAAGGATGCAG 7952 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || || || | || || |||||||| || ||||||||| | |||| Sbjct 7951 TATTGATTATTTCAAATCCAACTTTTCCACCAAAGGTGCTAGGCTTCCAGTACTCAGGGG 7892 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 ||||||| | || ||||||||||||||| || || || || || | ||| | || Sbjct 7891 AGCAGATAGCATTTCCCATGAGCCCTTTCAGAGAGAATGGTGCTCCAATCTCCACCATCG 7832 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | ||||| ||||||||||| || || || | ||| || | | ||| | ||| || || | Sbjct 7831 TTTCACCAAAGATGGCACCTGGTCGTGGCTGTTCTACAAGAAGGCCTGGGTACAGCTCCA 7772 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACAA 9179 ||| || | ||| ||||| || |||||| || || || || || || || ||| ||| Sbjct 7771 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGCAA 7712 Score = 96.9 bits (106), Expect = 5e-15 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552 ||||| |||||||| | ||| || | | || |||| | ||| ||| | ||| Sbjct 7202 ATGGAGTTGTTGTAGAGGAACTGCTGGAAAGTGTACTCCTGGTCATGTATTTGGAAAGTG 7143 Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||||| || | |||||| ||||||| |||||||| || || || |||||||||||| Sbjct 7142 TCAGGCAGAAGTGGGTGCCAGTGGTAGAGAGTATTGAATTCAGCTGCAATTCGGTTCTGG 7083 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 || ||||| | ||| |||||| | ||| || ||||| | || | ||||||||| | Sbjct 7082 TATTGAAATCGCTGGT--TGAACAGCAGCTCAGGATCAAACTTGAGTTTGAAGTGGTAGC 7025 Query 9671 CGCTGAGTTGCTGGACATA 9689 | || | || || ||||| Sbjct 7024 CACTCAAGTGTTGTACATA 7006 >seq27807 Length=5744 Score = 127 bits (140), Expect = 3e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 8966 CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCT 9025 ||||| ||||| ||||||||||||||| | |||||||||||| ||| | | |||||| Sbjct 4866 CCGCCAAAGGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCAAGGAGCCCC 4807 Query 9026 TTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGC 9085 |||| |||||| ||||| || | ||| | ||||| || || ||||| || ||| | Sbjct 4806 TTCAGGGAAAATGGAGCTCCAATCTCCACCATGCTTTCCCCAAAGATTCCATTGGGTTGG 4747 Query 9086 GGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCT 9145 ||||| || | | ||||| | |||| || | ||| |||| ||| |||||||| || Sbjct 4746 GGTTTCTCAAGCAGCAAGCCTGGATAGAACTCCAGAGCATCGATGTCTCCATAGAGCTCT 4687 Query 9146 TCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 | || || || ||| |||| | ||| ||| || Sbjct 4686 TGCAGTTCTGCCGCTTTCTCTTCCTCTCCTGCA 4654 Score = 98.7 bits (108), Expect = 1e-15 Identities = 164/235 (70%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 9487 ATGAGGATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCT--ATGC 9544 ||||| ||||| ||||||| | ||| || ||||| | |||| | | ||| ||| Sbjct 3566 ATGAGCATGGAGGTGTTGTAGAGGAACTGCTCGTAGCTGTACTCTTC--CCCCTGGATGA 3509 Query 9545 GAAAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTC 9604 || ||||||| ||| |||||| | ||||| ||||| || | || || | Sbjct 3508 CGAAGGAGTCAGGCATCAGCCCGTGCCAGTGATAGAGCTGGTTGAATTCCACTGCGATGC 3449 Query 9605 GGTTCTGGTACTGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGT 9664 ||||| ||||||| || || |||||||| | ||| |||||||| | || | || Sbjct 3448 GGTTCCGGTACTGGAACTGTGTCCCGAACAGCAGCTCGGGGTCAAACTTGAGGCTCAGGT 3389 Query 9665 GGTACCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 |||||||||||| ||||||||||| | | || || || |||||||| ||||| Sbjct 3388 AGTACCCGCTGAGGTGCTGGACATAGTCTTCAATGATGATCTTAATGGTCTCCCC 3334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 721983905986000