Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ara_20macao_20[genbank_20GCA_5F000400695.1_202013-06-26] 192,790 sequences; 1,204,700,227 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq30197 208 1e-48 seq22621 141 1e-28 >seq30197 Length=39373 Score = 208 bits (230), Expect = 1e-48 Identities = 370/540 (69%), Gaps = 0/540 (0%) Strand=Plus/Minus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || ||||| || || |||||||| || || || | || ||||| ||||| || || || Sbjct 25567 GCACCGTAAGCCACAGCCTCATCAGGATTGATGCTCTTGTTCAGCTCTTTGCCATTGAAG 25508 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 ||||| | || || ||||| || ||||| || || || ||||| |||| || || Sbjct 25507 AAATCCTGCAGCAGTTTCTGAATCTTTGGGATACGAGTAGAGCCACCAACCAGCACAATG 25448 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 |||| | | || || |||| ||| | || || || | || || || || |||| Sbjct 25447 TCATGGATCTGGGACTTGTCGAGCTTGGCATCCCGCAGAGCCTTCTCCACTGGATCCAGG 25388 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 |||||||| ||| | ||| || ||||| || || | ||| |||||||| ||| Sbjct 25387 GTGCCACGGAACAGGTCAGCATTCAGCTCTTCAAAGCGAGCTCTGGTGATGGATGTGTAG 25328 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || |||| ||| ||||| | || ||||| ||||| | | || | | ||||| | Sbjct 25327 AAGTCAATGCCCTCGTAGAGAGAGTCAATCTCAATACTGGCCTGCGTGCTAGAAGACAGA 25268 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || ||||| || ||||| ||||| || || | ||||||| || ||| ||| || Sbjct 25267 GTACGCTTGGCACGCTCGCACGCAGTGCGGAGGCGACGAACTGCGCGCTTGTTTTCGCTG 25208 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459 || || ||||| || || || || ||||| || |||||| | | | ||| Sbjct 25207 ATGTCCTTCTTGTGCTTGCGCTTGAACTCGGCAATGAAGTGGTTCACCATGCGGTTGTCG 25148 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || ||||| ||||||||||| || || || || || | ||| || || |||||||| || Sbjct 25147 AAGTCTTCTCCACCCAAGTGGGTGTCACCTGCAGTGGATTTCACCTCGAAGATACCGTCT 25088 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 ||||| | | | || |||||||| || ||||| || |||||||| ||||| || ||| Sbjct 25087 TCAATAGTCAGAATGGACACATCAAAGGTGCCACCTCCAAGGTCAAAGATGAGAACATTC 25028 Score = 102 bits (112), Expect = 1e-16 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACA 7653 |||||||| ||||| || || || || || || || || ||||| ||||| || || ||| Sbjct 24909 TTCTTATCCAGACCATAGGCTATTGCAGCAGCTGTCGGCTCATTGATAATTCGCAGGACA 24850 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 || || || ||||| ||| | ||||||||||| || || || || |||||||| || || Sbjct 24849 -TTGAGCCCTGCAATGGTTCCAGCATCTTTCGTAGCCTGACGCTGAGAATCGTTGAAATA 24791 Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGAC 7743 ||| ||||| || || || || | ||||| Sbjct 24790 GGCTGGGACAGTCACTACAGCATTGGTGAC 24761 >seq22621 Length=30986 Score = 141 bits (156), Expect = 1e-28 Identities = 608/964 (63%), Gaps = 68/964 (7%) Strand=Plus/Minus Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303 || |||||||| || |||||||||||||| || ||||| |||| || ||| | | || Sbjct 4606 AGCTCCTCAAAGCGGGCACGGGTAATGGAGGTGTAGAAGTCAATACCCTCGAAGAGGGAG 4547 Query 7304 TCAATTTCAATGGTTGTTTGTGCCGTCGAAGAT---AACGTTCGCTTTGCGCGCTCACAC 7360 ||||| |||||| | | ||||| | ||||| | || |||||||| | |||||| Sbjct 4546 TCAATCTCAATGCTAGCTTGTG---TGGAAGAGCTGAGGGTGCGCTTTGCCCTCTCACAA 4490 Query 7361 GCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGT 7420 || || || | || || | || ||| ||| || || || ||| || ||||| Sbjct 4489 GCTGTACGCAGCCGCCGCACTGCTCGCTTGTTGCCACCGATGTCACGCTTGTGCTTACGC 4430 Query 7421 TTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGT 7480 || || ||||| || || | | | || || || || ||||||| || Sbjct 4429 TTGAATTCTTCCACAAAATGGTTCACCATACGGTTGTCAAAGTCCTCCCCACCCAGATGG 4370 Query 7481 GTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACA 7540 || || || || || | || || |||||||| || | |||||| | | | || ||| Sbjct 4369 GTGTCACCAGCTGTGGACTTCACCTCAAAGATTCCATCCTCAATGGTAAGTATGGACACA 4310 Query 7541 TCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG------ 7594 ||||| ||||| || |||| |||||| ||||| || ||| | || | || Sbjct 4309 TCAAAAGTACCCCCTCCCAAGTCAAATATGAGCACATTCTTCTCACCAGCTCGAGTACCT 4250 Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACA 7653 ||||| || | || || || ||||| || || || || ||||| |||||||| | ||| Sbjct 4249 TTCTTGTCCAAGCCATAGGCTATAGCAGCTGCTGTGGGCTCATTGATAATACGCATCACA 4190 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAA----------- 7702 || ||||||| || || | |||||||| || || || Sbjct 4189 -TTAAGGCCAGTGATGGTGCCAGCATCTTTGGTGGCCTGNNNNNNNNNNNNNNNNNNNNN 4131 Query 7703 ---------------TCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTC 7747 || || ||||| || || || || | ||| || | | ||||| Sbjct 4130 NNNNNNNNNNNNNNNTCATTGAAGTAAGCAGGCACTGTAATGACGGCATTCTGCACTTTG 4071 Query 7748 TTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCT 7807 || ||||| | || || || || ||||| ||||| || ||||| || ||||| Sbjct 4070 CGCCCCAGATAGGCCTCAGCAATCTCCTTCATCTTGGTTAGGACCATAGAGCTGATCTCC 4011 Query 7808 TCAGCCGCAAACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGC 7866 || | | | | || ||| | ||||| || | || |||| | | |||| || | Sbjct 4010 TCTGG-GAAGAAAGTCTTCATCTCACCCTTGTACTCCACTTGCACCTTGGGCTTGCCACT 3952 Query 7867 AGCA-----CCGGGGATAACCT-TAT---------------ACGACCAATCTTTCATATC 7905 | || | ||| | || ||| | | ||| | |||||||| Sbjct 3951 ATCATTCACCTTGGGCTTGCCACTATCATTCACCACACGGAAGGGCCAGTGCTTCATATC 3892 Query 7906 GTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGT 7965 | || ||| |||| | |||| | ||||| |||||||| |||||||| | || Sbjct 3891 GGACTGCACCGTAGGGTCATCATACTTGCGGCCGATGAGACGCTTAGCATCAAAGATGGT 3832 Query 7966 GTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATT 8025 ||| | |||||||| || |||||||| || || || ||||| || || || ||| Sbjct 3831 GTTGGTAGGGTTCATAGCCACCTGGTTCTTGGCTGCATCACCGATGAGGCGCTCTGTAT- 3773 Query 8026 TTCCGTAAACGCGACGTACGATGGG-GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTT 8084 | || || || || || | |||| || || || |||||||||||||| ||||| || | Sbjct 3772 --CAGTGAAGGCCACATA-GCTGGGTGTGGTGCGGTTCCCTTGGTCGTTGGCAATGATCT 3716 Query 8085 CTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGA 8144 | || | | | || |||| || ||||| || ||||| || || | || || |||| Sbjct 3715 CCACTTTGCCATGCTGGAAGACACCCACGCAAGAGTACGTGGTGCCCAGGTCGATGCCGA 3656 Query 8145 TTGC 8148 |||| Sbjct 3655 TTGC 3652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633602209343600