Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ara_20macao_20[genbank_20GCA_5F000400695.1_202013-06-26] 192,790 sequences; 1,204,700,227 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq149694 122 2e-22 seq156245 109 1e-18 seq64820 95.1 2e-14 seq22601 95.1 2e-14 seq38092 86.0 1e-11 >seq149694 Length=533 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||||| ||| ||||| ||||| ||||| ||||| || | | ||||| || ||| Sbjct 302 AGGACCTTCTGCTTGAGCTGGGCGACCTGCTCCCGGAGCAGGCTGGCGGTGGAGGCCAGC 243 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | |||||| |||||| ||||||||||| || | ||| || ||||| Sbjct 242 TCCGTGTTCTGGCTCTTGAGGCTCTTCACCTTCTCCTCCAGGCGGGAGATCCGCTCCAGC 183 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 || | | |||||| |||| || || | ||| |||| || | ||| |||||||||||| Sbjct 182 TTCCTCTTGCGGCACTTGGAAGCGGCGATGCGATTCCTCAGCCGCTTCCGTTCCGCCTTG 123 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGA 241626 || || ||||| ||||||||||| || || Sbjct 122 ATCCGCTCCTGCGTGTCCATGTCGATGGGGGA 91 >seq156245 Length=697 Score = 109 bits (120), Expect = 1e-18 Identities = 122/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 || ||||||| ||| || || ||||||||||||||| |||||||||||||||||| ||| Sbjct 366 GTATACTCCACGATTTCTGTACACAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGG 307 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| |||| || || ||||||||||||||||| | || ||||| ||| Sbjct 306 TTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTAGGGTGTGCCTGTCTCAGTCTGC 247 Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCC 213690 ||| | | || | |||||| | | |||||| ||||||| Sbjct 246 GACTCAATGATGGAGTACCAGAGCTGCTGGGCCTTCACCACCC 204 >seq64820 Length=6338 Score = 95.1 bits (104), Expect = 2e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 48164 CTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAA 48223 |||||||| | || || ||| ||| |||||||| | || || | ||| ||||| ||| Sbjct 3443 CTGATGAGTTCATTAGAAAAGGTGAGTCCAGGCATTAATCCTCTTTTTTTCAGCCAAAAA 3384 Query 48224 ATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 |||| || |||||||||||||||||||| || |||||||| ||||| || Sbjct 3383 ATTGATGCAAAAGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCGAAAGC 3334 >seq22601 Length=11492 Score = 95.1 bits (104), Expect = 2e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 213174 TAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTT 213233 ||||| || ||||||||||| ||||| ||| || | || ||| |||| |||||||| Sbjct 1441 TAGGGTCCCTGCTCCTTGGCAAGCTCACAGCTGGCTTCCAAAGCACCGTAATAGATGGTC 1382 Query 213234 TCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGT 213293 ||||| |||| | ||| | || |||||| || | ||||| | | |||| | Sbjct 1381 TCAAAGATCTGCTGGTTCAAGCGCTGGGCCTCGGGACTCTCAAAGGGGAACCTCATCAGG 1322 Query 213294 TGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTG 213340 ||| |||| ||||| ||||| ||||||||||||||||| | ||| Sbjct 1321 ATGAAGGCATCTGCCAGGCCCTGCACCCCGATGCCGATGGGACGGTG 1275 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 212915 TATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGAT 212974 || |||||| || |||||||| || || | ||| | ||| |||||||||||||| Sbjct 3067 TACCTGGAACTCTCCTGAGAGGACTCTGCGTGTGTAGATGTTACTGGTGTAGGGCTCGAT 3008 Query 212975 GCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAG 213034 | |||||||| ||||| ||||| |||||| || || ||||| |||| | || || Sbjct 3007 GGATTCGTTGTTGCCCAGGATCTGAGCAGTGGAAGCAGTTGGCATTGGAGAAAGGAGAAG 2948 Query 213035 ACTGTTCCTCACTcc 213049 ||||||||| || || Sbjct 2947 ACTGTTCCTGACACC 2933 >seq38092 Length=14860 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/153 (73%), Gaps = 4/153 (3%) Strand=Plus/Minus Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCT- 213871 |||| || |||||| || || || | ||| ||||| ||| ||||| |||| ||| | Sbjct 13572 ACTCGCTTCATGAAGAGATCAGGAATCCAAAGCGCAAAGAAAAGGTCTCTGG--CTCGTT 13515 Query 213872 -CTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACG 213930 ||| || |||| ||| || || || ||||| |||||||||||| ||||| | Sbjct 13514 GCTCTTCTTTCCCAGTGTTCTTCTTCAAGTCCAGAAACTCAAAGATGTCCAAATGCCAGG 13455 Query 213931 GCTCCATGTAGATGGCAAAGGCGCCCGGCCTCT 213963 |||||| |||||||||||| || || || |||| Sbjct 13454 GCTCCAGGTAGATGGCAAAAGCCCCAGGTCTCT 13422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 929287922393600