Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ara_20macao_20[genbank_20GCA_5F000400695.1_202013-06-26] 192,790 sequences; 1,204,700,227 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq30197 89.7 3e-12 seq137757 86.0 4e-11 seq22621 86.0 4e-11 >seq30197 Length=39373 Score = 89.7 bits (98), Expect = 3e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 ||||| || |||||||||||||| || ||||| |||||||| || |||||||||||||| Sbjct 26478 GGTATCCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGATGCC 26537 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||||| || || || || ||||| ||||| Sbjct 26538 AATGGCATCCTGAACGTGTCTGCTGTGGATAA 26569 >seq137757 Length=27055 Score = 86.0 bits (94), Expect = 4e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 627769 CCATCACGTCCTGCTCTACCTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCCA 627828 |||||||| || ||||| || |||||||| ||||| ||| || | ||||| || ||| Sbjct 12429 CCATCACGACCAGCTCTCCCAATTTCTTGGTAATAGGATTCCATTTCCTTAGGGGCACCA 12370 Query 627829 TAATGTATTACTGCTCTCACATCTGATTTATTAATACCCATTCCAAATGCAATTGTTGCA 627888 ||||| || || | | ||||| |||||| || |||||||||||||| | ||| || Sbjct 12369 TAATGAATAACCATCCGGATATCTGCTTTATTGATGCCCATTCCAAATGCCACTGTAGCT 12310 Query 627889 AC 627890 || Sbjct 12309 AC 12308 >seq22621 Length=30986 Score = 86.0 bits (94), Expect = 4e-11 Identities = 191/287 (67%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||||| || || || | || || || ||| ||| || | ||| | || |||| ||| Sbjct 3652 GCAATCGGCATCGACCTGGGCACCACGTACTCTTGCGTGGGTGTCTTCCAGCATGGCAAA 3711 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || || |||||||| |||||||| || | || ||||| ||||| | || ||| Sbjct 3712 GTGGAGATCATTGCCAACGACCAAGGGAACCGCACCACACCCAGCTATGTGGCCTTCACT 3771 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || || | || || || ||||| || || | || | || || ||| || Sbjct 3772 GATACAGAGCGCCTCATCGGTGATGCAGCCAAGAACCAGGTGGCTATGAACCCTACCAAC 3831 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || || ||||||||||| | | || || || || | |||||| | || || || || Sbjct 3832 ACCATCTTTGATGCTAAGCGTCTCATCGGCCGCAAGTATGATGACCCTACGGTGCAGTCC 3891 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACC 474615 |||||| || ||||| || ||| | |||| | |||| || || Sbjct 3892 GATATGAAGCACTGGCCCTTCCGTGTGGTGAATGATAGTGGCAAGCC 3938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3259909501482920