Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ara_20macao_20[genbank_20GCA_5F000400695.1_202013-06-26] 192,790 sequences; 1,204,700,227 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq170293 149 8e-30 seq8761 149 8e-30 seq182542 125 9e-23 seq29259 120 4e-21 seq135846 116 5e-20 seq88840 116 5e-20 seq140883 107 2e-17 seq156245 89.7 6e-12 seq167282 87.8 2e-11 >seq170293 Length=2557 Score = 149 bits (164), Expect = 8e-30 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | || |||||||| ||||||||||| || | | || Sbjct 1839 GCTTGGCCAGCTCACCTGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGAGAGGTGA 1898 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| ||||||| |||| | Sbjct 1899 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCAGCGATGCGCTCGAAAA 1958 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 1959 TGTCGTTAACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 2018 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| || |||||||| Sbjct 2019 GCACCTGCTTCAGTACCTTGTA 2040 >seq8761 Length=2590 Score = 149 bits (164), Expect = 8e-30 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | || |||||||| ||||||||||| || | || Sbjct 1831 GCTTGGCCAGCTCACCCGGCAGCAAAAGCCGCACGGCTGTCTGGATCTCCCGAGAAGTGA 1890 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 1891 TGGTAGAGCGCTTGTTGTAGTGCGCCAGGCGAGAGGCCTCGCCGGCGATGCGCTCGAAGA 1950 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||||||| |||||||||| ||| | |||| || || ||| |||||||| Sbjct 1951 TGTCGTTGACAAAGGAGTTCATGATGCCCATAGCCTTGGAAGAAATACCCGTGTCGGGGT 2010 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 2011 GCACCTGCTTCAGCACCTTGTA 2032 >seq182542 Length=5291 Score = 125 bits (138), Expect = 9e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| |||||| ||| | ||| | |||||| ||||||||||| | || ||| ||| Sbjct 2293 GCCAGCTCGCCGGGCAGCAGCAGCCTCACGGCCGTCTGGATCTCCCTCGAAGTGATGGTG 2234 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 ||||||||| ||||||||| || || || | ||||||| |||| |||||| Sbjct 2233 GAGCGCTTGTTGTAGTGCGCCAAGCGCGACGCTTCCCCGGCGATGCGCTCGAAGATGTCG 2174 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 ||||| || |||||||||| ||| | ||| ||| ||||| ||| ||||| ||| Sbjct 2173 TTGACGAAGGAGTTCATGATACCCATGGCCTTAGAGGAAATGCCGGTGTCCGGGTGGACC 2114 Query 1254528 TGCTTGAGCACCTTGTA 1254544 ||||| ||||||||||| Sbjct 2113 TGCTTCAGCACCTTGTA 2097 >seq29259 Length=36405 Score = 120 bits (132), Expect = 4e-21 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || | | | ||||||||| || ||||||||||| || | | || Sbjct 31042 GCTTGGCCAGCTCTCCTGGGAGCAGCAGGCGCACTGCCGTCTGGATCTCCCGGGAGGTGA 31101 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | || ||||| || || || ||||||| || | | Sbjct 31102 TGGTGGAGCGCTTGTTGTAATGGGCCAGGCGAGACGCTTCTCCAGCGATGCGCTCAAAGA 31161 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| || || || |||||||||| ||||| |||| ||||||||| ||| |||| Sbjct 31162 TGTCATTAACGAAGGAGTTCATGATGCCCATCGCCTTGGAGGAGATGCCGGTGTCAGGGT 31221 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||||||||||| Sbjct 31222 GGACCTGCTTCAGCACCTTGTAGA 31245 >seq135846 Length=9076 Score = 116 bits (128), Expect = 5e-20 Identities = 123/162 (76%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 1254383 CTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTC 1254442 ||||||||| || | ||| || ||| ||||| | |||||||| ||| || || Sbjct 4929 CTGGATCTCCCGAGAAGTGATGGTAGAGCGTTTGTTGTAATGCGCCAGGCGGGAAGCTTC 4870 Query 1254443 GGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTT 1254502 | | ||||||| |||| ||||||||||| || |||||||||| ||| | |||| Sbjct 4869 GCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCATGATGCCCATAGCCTTGGA 4810 Query 1254503 GGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 ||||||||| |||||||||||||||||| ||||||||||| Sbjct 4809 CGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGTA 4768 >seq88840 Length=1052 Score = 116 bits (128), Expect = 5e-20 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 1254401 GATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGAT 1254460 ||| ||| ||||||||| | |||||||| || ||||||| | ||||||| |||| Sbjct 1050 GATGGTGGAGCGCTTGTTGTAATGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAA 991 Query 1254461 CATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGG 1254520 |||||||| || || |||||||||| ||| | |||| ||||||||| |||||| Sbjct 990 GATGTCGTTAACGAAGGAGTTCATGATGCTCATGGCCTTGGACGAGATGCCCGTGTCGGG 931 Query 1254521 GTGCACCTGCTTGAGCACCTTGTA 1254544 |||||||||||| || |||||||| Sbjct 930 GTGCACCTGCTTCAGTACCTTGTA 907 >seq140883 Length=29395 Score = 107 bits (118), Expect = 2e-17 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 1254401 GATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGAT 1254460 ||| ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| Sbjct 7992 GATGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAA 7933 Query 1254461 CATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGG 1254520 |||||||| || || |||||||||| ||| | ||| ||||| ||| |||||| Sbjct 7932 GATGTCGTTAACGAAGGAGTTCATGATGCCCATGGCCTTTGACGAGATACCCGTGTCGGG 7873 Query 1254521 GTGCACCTGCTTGAGCACCTTGTA 1254544 |||||||||||| | ||| ||||| Sbjct 7872 GTGCACCTGCTTCAACACTTTGTA 7849 >seq156245 Length=697 Score = 89.7 bits (98), Expect = 6e-12 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 ||||| || || ||||||||| | | | || |||||||||||||||||| | || Sbjct 357 ACGATTTCTGTACACAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTC 298 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 |||| || ||| |||| |||||||||||| | ||| ||||| |||||| | | | | Sbjct 297 CTGTTGCAGGAGTCTTTGTAGAGCATGTAGGGTGTGCCTGTCTCAGTCTGCGACTCAATG 238 Query 1628287 ATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCT 1628335 |||| |||||| ||| | || ||| || | ||| | ||||||| Sbjct 237 ATGGAGTACCAGAGCTGCTGGGCCTTCACCACCCTGCGCACACGGCCCT 189 >seq167282 Length=14869 Score = 87.8 bits (96), Expect = 2e-11 Identities = 88/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAA-GCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAA 1592244 || || || ||||| |||||||| | || |||| ||| | ||||||| | || || || Sbjct 6891 GCTGCAAATTACCTGGACATCAAAGGCT-TGCTTGATGTCACGTGCAAGACAGTTGCAAA 6949 Query 1592245 CATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 |||||||||||| ||| | || || || ||||||||||| || ||||||||| Sbjct 6950 CATGATCAAGGGGAAGACTCCGGAAGAAATCCGCAAGACATTCAACATCAAG 7001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6091317949764430