Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ara_20macao_20[genbank_20GCA_5F000400695.1_202013-06-26] 192,790 sequences; 1,204,700,227 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq148742 129 8e-25 seq64820 125 1e-23 seq38092 96.9 5e-15 seq17506 87.8 2e-12 seq22601 84.2 3e-11 >seq148742 Length=4363 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || || || || || || ||||| || || | ||| | Sbjct 501 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGCCCTGGCATCAGGCCCCTCTTCT 442 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||||||||| |||||||| || || ||||||||||||||||| ||||| ||||| | Sbjct 441 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 382 Query 39759 CAACAAGTCTCTCTCC 39774 |||| | |||||| || Sbjct 381 CAACCACTCTCTCACC 366 >seq64820 Length=6338 Score = 125 bits (138), Expect = 1e-23 Identities = 102/124 (82%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||||||| || | ||| |||||||| |||||||||||||||| || | |||| Sbjct 3454 CCTCATCTCTACTGATGAGTTCATTAGAAAAGGTGAGTCCAGGCATTAATCCTCTTTTTT 3395 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | |||||||| || | |||||||| ||||| |||||||| ||||| |||||||| || | Sbjct 3394 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCGAAAG 3335 Query 39759 CAAC 39762 | || Sbjct 3334 CTAC 3331 >seq38092 Length=14860 Score = 96.9 bits (106), Expect = 5e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 |||| || | || || ||||||||||| || || || | || || || ||||| || | Sbjct 6351 CACTGAACACCTTCTTGGTTTCCTTGTGCAAGTTGGACACTGCAATCCTTGCTGCCAGGA 6292 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 | |||||||| || |||| || || || || || |||| ||||| |||||||| | Sbjct 6291 TGGCATAGTCGGGGTGTTTGGTGGTCAGGGTTGCAGCCGTTTCAGCAGCCAACGTATCCA 6232 Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| | ||||| || || | || ||||| ||||| |||||||||| Sbjct 6231 GTTCCACTGTTGTGACACCACTGTAGAGCCCCTGAATCACTTTCATGG 6184 >seq17506 Length=29135 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 40004 TTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATAT 40063 |||||||| || ||||||||||| || ||||||||||||| ||||| |||||| ||| Sbjct 3826 TTTTCATTTACAATTCCATCACTGGCTGCAAAAAATGCCAGAACATGAGAAATAAAGTAT 3885 Query 40064 TTTTCATCGGGTGTCAATTTATTCCAGT 40091 |||||||| | | ||| || ||||||| Sbjct 3886 TTTTCATCTGCTTTCAGCTTGTTCCAGT 3913 >seq22601 Length=11492 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| || ||||| ||||| || || || ||| || | || || || || || || | Sbjct 5415 TCCAGCCATAGAAGTGCATGCTGGTGAGCTTGCCGTAGTTGGGCTCTGCAATGTGGATGT 5356 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 | | || || || |||||||||||||||||||| ||||| ||||| || | | | | | Sbjct 5355 TGAGGGACTGGCTCTGATCGATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGACAGTTT 5296 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 | || | || ||||| | ||||| | | ||| || | |||||| |||| Sbjct 5295 TCTGGGAGATCTCCCACACGGTCTTGTAGAGCTGCTTCAGATCATCCGGAA 5245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685253435655600