Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ara_20macao_20[genbank_20GCA_5F000400695.1_202013-06-26] 192,790 sequences; 1,204,700,227 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq30197 150 5e-31 seq22621 143 8e-29 seq41103 104 7e-17 seq64820 84.2 7e-11 seq37018 84.2 7e-11 >seq30197 Length=39373 Score = 150 bits (166), Expect = 5e-31 Identities = 367/549 (67%), Gaps = 8/549 (1%) Strand=Plus/Plus Query 349760 GaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACA 349819 |||| ||| |||| || ||||| | || ||||| || |||||||| || | || || Sbjct 25023 GAAAGGAATGTTCTCATCTTTGACCTTGGAGGTGGCACCTTTGATGTGTCCATTCTGACT 25082 Query 349820 CTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAA 349879 ||||||| || || || || || ||| | ||||| ||||| || || | ||||||||| Sbjct 25083 ATTGAAGACGGTATCTTCGAGGTGAAATCCACTGCAGGTGACACCCACTTGGGTGGAGAA 25142 Query 349880 GATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGC-TAAAAT 349938 || || || || || | || || || || || || ||||| ||||| || | Sbjct 25143 GACTTCGACAACCGCATGGTGAACCACTTCATTGCCGAGTTCAAGCG-CAAGCACAAGAA 25201 Query 349939 TGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAA 349998 || || | || || | ||| | |||||||| | |||||||| || ||||| || Sbjct 25202 GGACATCAGCGAAAACAAGCGCGCAGTTCGTCGCCTCCGCACTGCGTGCGAGCGTGCCAA 25261 Query 349999 GCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAA 350058 |||| | | || |||| || || || |||||| ||||| ||||| || |||| Sbjct 25262 GCGTACTCTGTCTTCTAGCACGCAGGCCAGTATTGAGATTGACTCTCTCTACGAGGGCAT 25321 Query 350059 AGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATG--GATCTTTTT 350116 || |||| |||| || || | ||||| |||||||| || ||| || || || Sbjct 25322 TGACTTCTACACATCCATCACCAGAGCTCGCTTTGAAGA--GCTGAATGCTGACCTGTTC 25379 Query 350117 AGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAG 350176 | | || ||||||| ||||| || | | ||||| || | ||| ||| Sbjct 25380 CGTGGCACCCTGGATCCAGTGGAGAAGGCTCTGCGGGATGCCAAGCTCGACAAGTCCCAG 25439 Query 350177 ATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTA 350236 || |||| | || | |||||||| ||||| ||||| ||||| |||| | | || Sbjct 25440 ATCCATGACATTGTGCTGGTTGGTGGCTCTACTCGTATCCCAAAGATTCAGAAACTGCTG 25499 Query 350237 TCTGAGTTTTTTAATGGCAAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGC 350295 || || || ||||||||||| | | ||| | || ||||| ||||| ||||| || Sbjct 25500 CAGGATTTCTTCAATGGCAAAGAGCTGAACAAGAGC-ATCAATCCTGATGAGGCTGTGGC 25558 Query 350296 ATATGGTGC 350304 || ||||| Sbjct 25559 TTACGGTGC 25567 Score = 111 bits (122), Expect = 5e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 ||||||| | ||||| ||||||||||| || ||| | |||||| || || ||||||| Sbjct 24768 ATGCTGTAGTGACTGTCCCAGCCTATTTCAACGATTCTCAGCGTCAGGCTACGAAAGATG 24827 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727 |||| | |||||| ||| | ||||| || |||| || ||||| || || ||||| |||| Sbjct 24828 CTGGAACCATTGCAGGGCTCAATGTCCTGCGAATTATCAATGAGCCGACAGCTGCTGCAA 24887 Query 349728 TTGCATATGGGCTTGATAA 349746 | || ||||| || ||||| Sbjct 24888 TAGCCTATGGTCTGGATAA 24906 >seq22621 Length=30986 Score = 143 bits (158), Expect = 8e-29 Identities = 303/450 (67%), Gaps = 8/450 (2%) Strand=Plus/Plus Query 349655 GCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCC 349714 || || ||||||||||||| ||| | || | ||||| | | || || ||||| ||| Sbjct 4155 GCCACCAAAGATGCTGGCACCATCACTGGCCTTAATGTGATGCGTATTATCAATGAGCCC 4214 Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAG------aaaaaaaT 349768 || || || || || || ||||| | || || | || | || | || ||| Sbjct 4215 ACAGCAGCTGCTATAGCCTATGGCTTGGACAAGAAAGGTACTCGAGCTGGTGAGAAGAAT 4274 Query 349769 ATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAG 349828 | || || ||||| || || || |||||||||||||| || |||| || |||| || Sbjct 4275 GTGCTCATATTTGACTTGGGAGGGGGTACTTTTGATGTGTCCATACTTACCATTGAGGAT 4334 Query 349829 GGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGAT 349888 ||||| ||||| || || | || |||||||| || ||||| ||||| || || ||||| Sbjct 4335 GGAATCTTTGAGGTGAAGTCCACAGCTGGTGACACCCATCTGGGTGGGGAGGACTTTGAC 4394 Query 349889 AATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGG 349947 || ||| | || |||||||| ||||||| |||||| |||| || ||| || || Sbjct 4395 AACCGTATGGTGAACCATTTTGTGGAAGAATTCAAGCGT-AAGCACAAGCGTGACATCGG 4453 Query 349948 AGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTT 350007 | || ||||| |||| || || | || || ||||| | || ||||| || | Sbjct 4454 TGGCAACAAGCGAGCAGTGCGGCGGCTGCGTACAGCTTGTGAGAGGGCAAAGCGCACCCT 4513 Query 350008 ATCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTT 350067 ||| | || ||| | ||||| ||||| || || || || | || |||| Sbjct 4514 CAGCTCTTCCACACAAGCTAGCATTGAGATTGACTCCCTCTTCGAGGGTATTGACTTCTA 4573 Query 350068 TTCATCTATTACACGTGCTCGGTTTGAAGA 350097 | || ||||| ||||| || ||||| || Sbjct 4574 CACCTCCATTACCCGTGCCCGCTTTGAGGA 4603 >seq41103 Length=7314 Score = 104 bits (114), Expect = 7e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 350177 ATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTA 350236 |||||||| | || | ||||| || || || || ||||| ||| | || || || | Sbjct 5512 ATTGATGAGATTGTGCTTGTTGGGGGCTCCACTCGCATTCCCAAAATACAGCAACTAGTT 5453 Query 350237 TCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCA 350296 ||||| || ||||| |||||||||||| | |||||||||||||| |||||||| Sbjct 5452 AAAGAGTTCTTCAATGGGAAAGAACCTTCTCGTGGCATTAATCCAGATGAGGCTGTTGCC 5393 Query 350297 TATGGTGCTGCTGTTCAGGC 350316 |||||||||||||| ||||| Sbjct 5392 TATGGTGCTGCTGTCCAGGC 5373 Score = 95.1 bits (104), Expect = 4e-14 Identities = 125/173 (72%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTT 349774 || ||||| || ||||| ||||| | || || ||| || || || ||||| || Sbjct 6245 ACAGCTGCTGCCATTGCTTATGGATTGGACAA---GAGAGAGGGTGAGAAGAATATCCTC 6189 Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834 | ||||| || |||||||| ||||||||||| || || || || |||| | ||| | Sbjct 6188 GTGTTTGACTTGGGTGGTGGAACTTTTGATGTCTCCCTCCTCACCATTGATAATGGAGTC 6129 Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 |||||||| || ||| |||||| || || || ||||||||||| ||||| Sbjct 6128 TTTGAAGTCGTGGCTACTAATGGTGACACTCACCTGGGTGGAGAAGACTTTGA 6076 >seq64820 Length=6338 Score = 84.2 bits (92), Expect = 7e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 223719 ATGCCTCATCTCTTGATATTAATTCATTTGAAAATGTTAATCCAGGCATTAAACCTCTCT 223778 || |||||||||| || | |||||| ||||| || | |||||||||||| ||||| | Sbjct 3457 ATACCTCATCTCTACTGATGAGTTCATTAGAAAAGGTGAGTCCAGGCATTAATCCTCTTT 3398 Query 223779 TTTTCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATACCTTCTACACAAGCAA 223838 |||||| |||||| |||| ||||| || || || || || ||||| || || | Sbjct 3397 TTTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCGA 3338 Query 223839 ACGCTACTA 223847 | ||||||| Sbjct 3337 AAGCTACTA 3329 >seq37018 Length=4169 Score = 84.2 bits (92), Expect = 7e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 140548 CTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGA 140607 ||||||| || || || ||||| | || || |||||||| || || ||||||||||||| Sbjct 731 CTTTTTGGATGTTGTAGTCAGACAGCGTGCGTCCATCTTCGAGCTGCTTTCCAGCAAAGA 672 Query 140608 TTAGACGTTGCTGATCAGGAGGAATTCCT 140636 | || || ||||| ||||||||||| ||| Sbjct 671 TCAGTCGCTGCTGGTCAGGAGGAATGCCT 643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1511511536960370