Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ara_20macao_20[genbank_20GCA_5F000400695.1_202013-06-26] 192,790 sequences; 1,204,700,227 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq3380 118 1e-21 seq172252 104 3e-17 seq5349 104 3e-17 >seq3380 Length=591 Score = 118 bits (130), Expect = 1e-21 Identities = 257/378 (68%), Gaps = 14/378 (4%) Strand=Plus/Minus Query 13683 GAAGAGGTCGAGTTTCCCATCGCCTACTCGAT---CGTGATCCACCACAAGATCGAGATG 13739 ||||||| || || ||||| |||||| || |||| ||| | || | |||| Sbjct 422 GAAGAGGCCGCCTTCCCCATTGCCTACGTTATGACCGTG---CACAAGGAGTTTGAGACC 366 Query 13740 TTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGAC 13799 || ||||| ||| | ||||| | ||| || |||||| |||||||| |||||||||| Sbjct 365 TTTGAGCGGCTCTTCAGGGCAGTGTACATGCCCCAGAACATCTACTGCATCCACGTGGAT 306 Query 13800 TCCAAGTC--CGGCGACGAGTTC-ATCCGGGGCGTCTCGGCCATCGCCAGG-TGCTTCCC 13855 ||||| | |||| | | ||| ||| ||||| |||| || | |||||||| Sbjct 305 GCCAAGGCACCGGC--CCACTTCCATC--GGGCGGTGCGGCGCCTGCTGGACTGCTTCCC 250 Query 13856 TAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCA 13915 || | ||| ||| ||| || | ||||| || ||| | ||| ||| Sbjct 249 CAATGCCTTCCTTGCCTCGCGGATGGAGCGGGTGGTCTATGGCGGCATCTCCCGCCTGCG 190 Query 13916 GGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCT 13975 ||| |||||| ||||||| |||||| ||||| |||| ||| | |||||||| Sbjct 189 GGCTGACCTCCACTGCATGAGAGACCTGCTGGCCTCAGCCGTGCCCTGGCGCTACCTGCT 130 Query 13976 CAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAA 14035 |||| ||||| ||||||||| | |||||||||| |||||| || | | |||||| Sbjct 129 CAACACCTGCGGCCAGGACTTCCCCTTGAAGACCAACCGGGAGATAGTCCAGCTGCTGAA 70 Query 14036 GGCCCTGGGCGGCAAGAA 14053 || ||| | |||||||| Sbjct 69 GGGCCTCAGGGGCAAGAA 52 >seq172252 Length=11173 Score = 104 bits (114), Expect = 3e-17 Identities = 146/203 (72%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 13743 GAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCC 13802 ||||| |||||| || || |||| | ||| |||||| |||||||||||||| | || | Sbjct 277 GAGCGGCTCCTGCGGTCCCTCTATGTCCCCCAGAACGTCTACTGCGTCCACATTGATAAC 218 Query 13803 AAGTCCGGCGACGAGTTCATCCGG--GGCGTCTCGGCCATCGCCAGGTGCTTCCCTAACG 13860 |||||| | || ||| | || | ||| |||||||| |||||||| |||| Sbjct 217 AAGTCCCCAGCCGCCTTC--CAGGAAGCCGTGCGGGCCATCGTAGCCTGCTTCCCCAACG 160 Query 13861 TGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCG 13920 | |||| || ||| | |||||||| || | ||||||| || ||||||||| Sbjct 159 TCTTTGTGGCGAGCCACCTGGAAGACGTGGTCTATGCCTCCTGGTCCCGGCTGCAGGCCG 100 Query 13921 ACCTCAGCTGCATGTCGGACCTG 13943 |||||| ||||||| ||||||| Sbjct 99 ACCTCAACTGCATGCAGGACCTG 77 >seq5349 Length=25177 Score = 104 bits (114), Expect = 3e-17 Identities = 217/321 (68%), Gaps = 2/321 (1%) Strand=Plus/Plus Query 14275 AGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACGGGACGC 14334 ||||||| |||||||| ||||||||| | |||||||| | | | || || || Sbjct 54 AGGACACCTACAGCCCTGACGAGCACGTCTGGGCCACGCTCAACCGTGTGCCTGGTGTGC 113 Query 14335 CCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTGGGCCAAGGTCAGGT 14394 |||| | || ||| ||| ||||| | | ||| |||||| || | | | Sbjct 114 CCGGCGCCATGCCCCCGAACGACAAGTTCCAGCTCTCAGACATGAACTCCCTGCCCCGTC 173 Query 14395 TCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCGCCTTGCG 14454 | ||||||||| | ||| |||||||| | ||| || || || | |||||||| ||| Sbjct 174 TGGTCAAGTGGGAGTACCTGGAGGGGGACACCAACAAGGGCGCGCCCTACCCGCCCTGCA 233 Query 14455 ACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTGGCTGAAG- 14513 |||| ||| | |||| ||||||||| |||| ||||||||| ||| || Sbjct 234 CCGGCCAGCACCAGCGCGCCGTCTGCATCTACGGGGTGGGCGACGTGCCCTGGATGCTCC 293 Query 14514 AGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACGAGACGGACGAGTTCGCCGTGCGC 14573 ||| | | ||||| || ||||||||||||||| | | |||||| ||| | | Sbjct 294 AGCAGCAC-CACCTCTTGGCCAACAAGTTCGACCCCTTGGTGGACGACGCCGCTATCCAA 352 Query 14574 TGTCTGGACGAGGACGTGCGC 14594 |||||||| ||| || ||||| Sbjct 353 TGTCTGGAGGAGCACCTGCGC 373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657151720870400