Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ara_20macao_20[genbank_20GCA_5F000400695.1_202013-06-26] 192,790 sequences; 1,204,700,227 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq159201 93.3 3e-14 seq189208 87.8 1e-12 >seq159201 Length=4296 Score = 93.3 bits (102), Expect = 3e-14 Identities = 121/162 (75%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT-GTGCTCGAA 30075 || |||||||||||||| || || || ||||||| || ||||| || || ||||| ||| Sbjct 2354 AAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCCTCTCTGGTGCT-GAA 2412 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| ||| |||| || || | || || || || ||||| ||||| || || || | Sbjct 2413 ACCCTGCTTATCCAGGAACTCACGTGACCCATTAGCATCCCAAATCTTCACACCTTTTGC 2472 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG 30177 ||||||||||||| ||||| || || || || || ||||| Sbjct 2473 AGAGAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAACACAG 2512 >seq189208 Length=13965 Score = 87.8 bits (96), Expect = 1e-12 Identities = 85/108 (79%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || |||||||||||||| |||| || | |||||| | ||||| | |||||| || || Sbjct 6149 TTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTTAGAGGACGATTCTTCTCAGGA 6208 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||| ||||| || ||| |||||||||||| | ||||| |||||| Sbjct 6209 ATGGA-AACCAGGTTTTTTTACCCATTATCAAGGCATTCTGTTTACCT 6255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405208867521940