Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ara_20macao_20[genbank_20GCA_5F000400695.1_202013-06-26] 192,790 sequences; 1,204,700,227 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq148742 107 3e-18 seq64820 107 3e-18 seq22601 84.2 3e-11 >seq148742 Length=4363 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | ||| || || || || ||||| ||||| || || | ||| || Sbjct 499 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGCCCTGGCATCAGGCCCCTCTTCTTC 440 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||||||||| || || || || |||||||| |||||||| || || || || || Sbjct 439 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 380 Query 46774 ACAAGTCTCTCTCC 46787 || | |||||| || Sbjct 379 ACCACTCTCTCACC 366 >seq64820 Length=6338 Score = 107 bits (118), Expect = 3e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||||||||| || | ||| |||||||| ||||| |||||||||| ||| | ||||| Sbjct 3452 TCATCTCTACTGATGAGTTCATTAGAAAAGGTGAGTCCAGGCATTAATCCTCTTTTTTTC 3393 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||| || | || ||||| ||||| ||||| || ||||| || || ||||| || Sbjct 3392 AGCCAAAAAATTGATGCAAAAGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCGAAAGCT 3333 Query 46774 AC 46775 || Sbjct 3332 AC 3331 >seq22601 Length=11492 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| || ||||| |||||||| || || ||| || | || || || || || || | Sbjct 5415 TCCAGCCATAGAAGTGCATGCTGGTGAGCTTGCCGTAGTTGGGCTCTGCAATGTGGATGT 5356 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 | | ||||| || |||||||||||||||||||| || || ||||| || | | || | Sbjct 5355 TGAGGGACTGGCTCTGATCGATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGACAGTTT 5296 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 | || | || ||||| | || ||| | | || || | |||||| |||| Sbjct 5295 TCTGGGAGATCTCCCACACGGTCTTGTAGAGCTGCTTCAGATCATCCGGAA 5245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711216317212800