Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ara_20macao_20[genbank_20GCA_5F000400695.1_202013-06-26] 192,790 sequences; 1,204,700,227 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq2241 158 2e-33 seq27807 118 2e-21 >seq2241 Length=39700 Score = 158 bits (174), Expect = 2e-33 Identities = 180/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||| ||| || |||||||| ||||| ||| ||| ||||| || || |||||||| Sbjct 5651 ATGAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCTGGGTGCTCCTGTTTCAGG 5592 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || |||| |||||||||||| ||||| || || ||||||||||| | || || Sbjct 5591 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCGTACATCATCAAGCCTGGG 5532 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| ||||| |||| || || |||| | ||| || ||| || | | ||||| Sbjct 5531 ACCAAACCAAACACCTCCTGCCCAACAGAAAACTGCAAGTGTTCTGGTATGTGAGGAGGG 5472 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | |||| ||| || || | || ||||||||||| || ||||||||| Sbjct 5471 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCAATCATC 5412 Query 9484 TG 9485 || Sbjct 5411 TG 5410 Score = 152 bits (168), Expect = 7e-32 Identities = 225/315 (71%), Gaps = 4/315 (1%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| || || || ||| | ||||| || ||| | | ||| Sbjct 8011 GGAAAGCTGTGAAGGGACAGCCTTTCACATTGTTGCAGACGAGCTTCTGTAAGGATGCAG 7952 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| || | || || || | ||| || |||||||| |||||||||||| | |||| Sbjct 7951 TATTGATTATTTCAAATCCAACTTTTCCACCAAAGGTGCTAGGCTTCCAGTACTCAGGGG 7892 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 ||||||| | || ||||||| ||||| || ||||| || || || | ||| | || Sbjct 7891 AGCAGATAGCATTTCCCATGAGCCCTTTCAGAGAGAATGGTGCTCCAATCTCCACCATCG 7832 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAAT-CCGGTGTACAGCTCC 8527 | ||||| |||||||| || || |||| ||| || ||||| || | |||||||||| Sbjct 7831 TTTCACCAAAGATGGCACCTGGTCGTGGCTGTTCTAC-AAGAAGGCCTGGGTACAGCTCC 7773 Query 8528 ACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG-- 8585 | ||| || | |||||| ||||| | ||||| || || || || |||||||||| Sbjct 7772 ATAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGCA 7713 Query 8586 TTTTATTAATAAAAA 8600 || |||| |||||| Sbjct 7712 ATTGATTAGTAAAAA 7698 >seq27807 Length=5744 Score = 118 bits (130), Expect = 2e-21 Identities = 178/253 (70%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || | |||||| |||| |||||||| || |||||||| ||||| ||||| Sbjct 2498 TCACCAATGAGGATGAGACGAGCCGTCTGGAAGAGCTGCTCGTCGCTCCAGGTGGGATGC 2439 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||||| || || || || | |||||| || | ||||||| ||||||||||| Sbjct 2438 TCCCGTTTCAGTACGTCACAGACACGGTTGTGCTCACGCAGCCAGAGCGTGGCGTACATG 2379 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 ||||| || | ||| || || |||| || || | ||||| || | | | ||| Sbjct 2378 CACAGCCCCGGCAGCAGCCCGAACACCTCCTGCCCTATCGCCAGCTGCTTCTCCTTGGGG 2319 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 || | || || |||| |||||| ||| || | || |||| | |||||| |||| || Sbjct 2318 ACGGCAGGCGGGTAGACCATGTGAACCGGGGCATCGGTGACAGTGGGGGGGTACACCTCT 2259 Query 9472 CCGTCAATCATCT 9484 || || | || || Sbjct 2258 CCATCCACCACCT 2246 Score = 116 bits (128), Expect = 5e-21 Identities = 211/309 (68%), Gaps = 0/309 (0%) Strand=Plus/Minus Query 8277 CATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACT 8336 |||| || || || |||| | | || ||| ||| |||||| ||| || || || Sbjct 4964 CATCTGGCACACGAAACGACACGTATGGGCACTTCTTCACGTTGAGACACACGAGCTTCT 4905 Query 8337 GAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCC 8396 | | ||| |||| || ||| | || || ||||||| ||||| ||||| |||| Sbjct 4904 TGAGCGATGCTGTCTTAACTATCTCAAAGCCAGTTGCTCCGCCAAAGGTACTGGGTTTCC 4845 Query 8397 AGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCA 8456 ||||| | |||||||||||| ||| | | ||| || || ||||| || ||||| || | Sbjct 4844 AGTACTCTGGGGAGCAGATGGGGTTTCCAAGGAGCCCCTTCAGGGAAAATGGAGCTCCAA 4785 Query 8457 ACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGG 8516 ||| | ||||| || || ||||| | ||||| |||| || || | || || || | Sbjct 4784 TCTCCACCATGCTTTCCCCAAAGATTCCATTGGGTTGGGGTTTCTCAAGCAGCAAGCCTG 4725 Query 8517 TGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCT 8576 || | ||||| ||| |||| |||||| || || | ||||| || || |||| | Sbjct 4724 GATAGAACTCCAGAGCATCGATGTCTCCATAGAGCTCTTGCAGTTCTGCCGCTTTCTCTT 4665 Query 8577 TTTCTCCTG 8585 ||||||| Sbjct 4664 CCTCTCCTG 4656 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/145 (75%), Gaps = 4/145 (3%) Strand=Plus/Minus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 9707 || ||||| |||||||| |||| |||||| | | || || || || ||| | | Sbjct 1743 CTCACCCCGTGTCCCAGCGCTTTGGTGAAGCCGCGTCCCATCTTCCCGGAT--GTCTTGA 1686 Query 9708 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 9767 | |||||||| |||||||| ||| | || ||||||||||| | ||||||||||||||||| Sbjct 1685 AGAACTGGTGGGTGAAATGCTGGGCGAAGAAGGCAAACATCAGGTTGGTGCCCTGGGGAT 1626 Query 9768 CGGGAGTGAAGGTCCTCCGAAGAAG 9792 | | |||| ||||||| || || Sbjct 1625 CAGCTTTGAACTTCCTCCGCAGCAG 1601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715149216521600