Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20
2014-06-25] 53,491 sequences; 1,127,622,302 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq1807 120 4e-22
seq25901 114 2e-20
seq11560 96.9 4e-15
>seq1807
Length=48173
Score = 120 bits (132), Expect = 4e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216
||||||||||||| || | ||| || ||||| |||||||| ||||||| || | || |
Sbjct 45217 CCTCGTCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 45276
Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276
| |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||| |
Sbjct 45277 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 45336
Query 24277 CAATAAGTCTTTCTCC 24292
| | | || ||||||
Sbjct 45337 CTACTACTCGTTCTCC 45352
>seq25901
Length=46880
Score = 114 bits (126), Expect = 2e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216
|||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| |
Sbjct 11025 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCT 10966
Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276
| ||||||||||| | ||||| || || |||||||| || ||||| ||||| |||||||
Sbjct 10965 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 10906
Query 24277 CAATAAGTCTTTCTCC 24292
||| | ||| || ||
Sbjct 10905 CAACCACTCTCTCACC 10890
>seq11560
Length=34702
Score = 96.9 bits (106), Expect = 4e-15
Identities = 111/147 (76%), Gaps = 2/147 (1%)
Strand=Plus/Minus
Query 54029 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 54088
||||| ||||| ||||||||||||||||| || || | || || ||||||| || ||
Sbjct 8440 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 8381
Query 54089 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 54147
||||| || || || ||||| |||||| || || ||| | | || || ||||||| ||
Sbjct 8380 TCCTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATGG 8322
Query 54148 TTCCAAGTATATGGTCATAACTCCAGG 54174
|||| ||| |||| | | |||||||
Sbjct 8321 CTCCAGGTAGATGGCAAAAGCTCCAGG 8295
Score = 84.2 bits (92), Expect = 3e-11
Identities = 118/166 (71%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827
|||| |||| ||| || ||||||||||| | ||| || || || || || || || || |
Sbjct 2388 CACTGAATACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATCCTCGCTGCCAGGA 2329
Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887
| ||||| || || |||| || || || || ||| |||| || | ||| || ||||
Sbjct 2328 TAGCATAGTCAGGGTGTTTGGTGGTCAGGGTTGCAGCTGTTTCAGCAGCCAGCGTATCCA 2269
Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933
||| ||||| || || ||| | || | || || || || |||||
Sbjct 2268 GTTCCACCGTCGTGACACCACTGTACAGCCCCTGAATCACTTTCAT 2223
Score = 84.2 bits (92), Expect = 3e-11
Identities = 138/199 (69%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 53388 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 53447
||||||| || || ||||||| || || || |||||||| || || || || |||||||
Sbjct 12176 CATATGTTTCATACGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCGT 12117
Query 53448 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 53507
|||||||||| || || |||| || || | || || || | || ||||| || |
Sbjct 12116 AATAAATGGTCTCAAAAATCTGCTGGTTCAAGCGCTGGGCCTCGGGACTTTCAAAGGGGT 12057
Query 53508 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 53567
| | | | || || || ||||| | || || |||||||| || || || | ||| |
Sbjct 12056 ACCTCATCAAGATGAAAGCATCTGCCAGGCCCTGCACACCAATGCCAATGGGACGATGGC 11997
Query 53568 TCTTATTAGAGATTTCAGC 53586
| || ||| ||||||
Sbjct 11996 GTCTGTTGGAGCGTTCAGC 11978
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593324615473680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |