Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20 2014-06-25] 53,491 sequences; 1,127,622,302 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq16976 132 5e-26 seq25901 87.8 2e-12 >seq16976 Length=50896 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| || |||||| |||| || || ||| Sbjct 49981 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACAATCACCCTCGAGGTTGAGCCCAGT 49922 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| ||||| | ||||| || ||||| ||| | || ||| Sbjct 49921 GACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 49862 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| ||| ||||| ||||| || || | |||||||| ||||||||| Sbjct 49861 CAGAGGTTGATCTTCGCTGGCAAGCAGCTAGAAGATGGCCGCACCCTGTCTGACTACAAC 49802 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| |||| || ||||| ||| ||||| ||||||| ||| Sbjct 49801 ATCCAGAAGGAATCCACCCTTCATCTTGTGCTGCGCCTGAGGGGTGGC 49754 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| |||| || || ||| Sbjct 50209 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 50150 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| ||||| | ||||| || ||||| ||| | || ||| Sbjct 50149 GACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 50090 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| ||| ||||| |||||||| || | |||||||| ||||||||| Sbjct 50089 CAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 50030 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| | || || || || ||| |||| ||||| || ||| Sbjct 50029 ATCCAGAAGGAATCTACCCTTCACCTTGTGCTGCGTTTGAGAGGTGGC 49982 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| || |||||| |||| || || ||| Sbjct 50437 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACAATCACCCTCGAGGTTGAGCCCAGT 50378 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| ||||| | ||||| || ||||| ||| | || ||| Sbjct 50377 GACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 50318 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| ||| ||||| ||||| || || | |||||||| ||||||||| Sbjct 50317 CAGAGGTTGATCTTCGCTGGCAAGCAGCTAGAAGATGGCCGCACCCTGTCTGACTACAAC 50258 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| |||| || ||||| ||| |||| ||||| || ||| Sbjct 50257 ATCCAGAAGGAATCCACCCTTCATCTTGTGCTGCGTTTGAGAGGTGGC 50210 Score = 122 bits (134), Expect = 9e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || || || | || ||||| ||||| ||| |||| || || | Sbjct 50669 AAACATGCAGATCTTTGTGAAGACCATGACTGGCAAGACCATAACCCTCGAGGTTGAGCC 50610 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 || |||| | | | | | |||| ||||| | ||||| || ||||| ||| | || Sbjct 50609 CAGTGACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGA 50550 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| | | |||| ||| ||||| |||||||| || | |||||||| ||||| Sbjct 50549 TCAGCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTA 50490 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||||| | || || || || ||| |||| ||||| || ||| Sbjct 50489 CAACATCCAGAAGGAATCTACCCTTCACCTTGTGCTGCGTTTGAGAGGTGGC 50438 >seq25901 Length=46880 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| ||||| || || || || ||| ||||||||||||| || || || ||||||| Sbjct 10900 TGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTT 10959 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | ||||| ||||| || ||||||||| ||| || || || ||| | Sbjct 10960 GGCTGAAGAAGAGAGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTTATTAGCAGAG 11019 Query 117162 ACGAGG 117167 | |||| Sbjct 11020 ATGAGG 11025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514874705122160