Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20
2014-06-25] 53,491 sequences; 1,127,622,302 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq16976 132 5e-26
seq25901 87.8 2e-12
>seq16976
Length=50896
Score = 132 bits (146), Expect = 5e-26
Identities = 166/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || || ||||| || |||||| |||| || || |||
Sbjct 49981 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACAATCACCCTCGAGGTTGAGCCCAGT 49922
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | | |||| ||||| | ||||| || ||||| ||| | || |||
Sbjct 49921 GACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 49862
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | | |||| ||| ||||| ||||| || || | |||||||| |||||||||
Sbjct 49861 CAGAGGTTGATCTTCGCTGGCAAGCAGCTAGAAGATGGCCGCACCCTGTCTGACTACAAC 49802
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||||||||||| |||| || ||||| ||| ||||| ||||||| |||
Sbjct 49801 ATCCAGAAGGAATCCACCCTTCATCTTGTGCTGCGCCTGAGGGGTGGC 49754
Score = 127 bits (140), Expect = 2e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || || ||||| ||||||||| |||| || || |||
Sbjct 50209 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 50150
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | | |||| ||||| | ||||| || ||||| ||| | || |||
Sbjct 50149 GACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 50090
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | | |||| ||| ||||| |||||||| || | |||||||| |||||||||
Sbjct 50089 CAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 50030
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||||||||||| | || || || || ||| |||| ||||| || |||
Sbjct 50029 ATCCAGAAGGAATCTACCCTTCACCTTGTGCTGCGTTTGAGAGGTGGC 49982
Score = 127 bits (140), Expect = 2e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || || ||||| || |||||| |||| || || |||
Sbjct 50437 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACAATCACCCTCGAGGTTGAGCCCAGT 50378
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | | |||| ||||| | ||||| || ||||| ||| | || |||
Sbjct 50377 GACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 50318
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | | |||| ||| ||||| ||||| || || | |||||||| |||||||||
Sbjct 50317 CAGAGGTTGATCTTCGCTGGCAAGCAGCTAGAAGATGGCCGCACCCTGTCTGACTACAAC 50258
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||||||||||| |||| || ||||| ||| |||| ||||| || |||
Sbjct 50257 ATCCAGAAGGAATCCACCCTTCATCTTGTGCTGCGTTTGAGAGGTGGC 50210
Score = 122 bits (134), Expect = 9e-23
Identities = 166/232 (72%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745
||| ||||| || || || || || | || ||||| ||||| ||| |||| || || |
Sbjct 50669 AAACATGCAGATCTTTGTGAAGACCATGACTGGCAAGACCATAACCCTCGAGGTTGAGCC 50610
Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
|| |||| | | | | | |||| ||||| | ||||| || ||||| ||| | ||
Sbjct 50609 CAGTGACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGA 50550
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
||||| | | |||| ||| ||||| |||||||| || | |||||||| |||||
Sbjct 50549 TCAGCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTA 50490
Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||||||||||||||| | || || || || ||| |||| ||||| || |||
Sbjct 50489 CAACATCCAGAAGGAATCTACCCTTCACCTTGTGCTGCGTTTGAGAGGTGGC 50438
>seq25901
Length=46880
Score = 87.8 bits (96), Expect = 2e-12
Identities = 95/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101
|||| ||||| || || || || ||| ||||||||||||| || || || |||||||
Sbjct 10900 TGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTT 10959
Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161
|||| ||||| | ||||| ||||| || ||||||||| ||| || || || ||| |
Sbjct 10960 GGCTGAAGAAGAGAGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTTATTAGCAGAG 11019
Query 117162 ACGAGG 117167
| ||||
Sbjct 11020 ATGAGG 11025
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 514874705122160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |