Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20
2014-06-25] 53,491 sequences; 1,127,622,302 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq16976 107 1e-18
>seq16976
Length=50896
Score = 107 bits (118), Expect = 1e-18
Identities = 154/215 (72%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236
|||||| ||||| | ||| ||| ||||| ||||||||||| ||||| ||| | ||
Sbjct 49997 CAGCACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATC 50056
Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296
|||| ||||||||| ||||| || | || |||||| || ||| | || ||||||||
Sbjct 50057 TTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTC 50116
Query 34297 GGCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATG 34354
|| ||||| ||| | || | || | || | | || || || | ||||||
Sbjct 50117 --CTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATG 50174
Query 34355 GTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| ||||| || || || |||||||||||||||||
Sbjct 50175 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 50209
Score = 98.7 bits (108), Expect = 6e-16
Identities = 152/215 (71%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236
|||||| ||||| | ||| ||| ||||| ||||||||||| ||||| ||| | ||
Sbjct 50453 CAGCACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATC 50512
Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296
|||| ||||||||| ||||| || | || |||||| || ||| | || ||||||||
Sbjct 50513 TTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTC 50572
Query 34297 GGCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATG 34354
|| ||||| ||| | || | || | || | | || || || | || |||
Sbjct 50573 --CTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTTATG 50630
Query 34355 GTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| ||||| || | || |||||||||||||||||
Sbjct 50631 GTCTTGCCAGTCATGGTCTTCACAAAGATCTGCAT 50665
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || | ||| | |||||| || || | || ||| ||||| ||||||||||| |||
Sbjct 49755 CCACCCCTCAGGCGCAGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 49814
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| | || || | ||||||||| ||||| || | || |||||| || |||
Sbjct 49815 AGGGTGCGGCCATCTTCTAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGA 49874
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340
| || |||||||| || ||||| ||| | || | || | || | | || |
Sbjct 49875 ATGCCTTCCTTGTC--CTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAA 49932
Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
| || | ||||| || ||||| || || || |||||||||||||||||
Sbjct 49933 CCTCGAGGGTGATTGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 49981
Score = 89.7 bits (98), Expect = 3e-13
Identities = 150/215 (70%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236
|||||| || || | || ||| ||||| ||||||||||| ||||| ||| | ||
Sbjct 50225 CAGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATC 50284
Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296
|| | ||||||||| ||||| || | || |||||| || ||| | || ||||||||
Sbjct 50285 TTCTAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTC 50344
Query 34297 GGCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATG 34354
|| ||||| ||| | || | || | || | | || || || | |||||
Sbjct 50345 --CTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATT 50402
Query 34355 GTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| ||||| || || || |||||||||||||||||
Sbjct 50403 GTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 50437
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 322861382396960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |