Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20
2014-06-25] 53,491 sequences; 1,127,622,302 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq25901 111 1e-19
seq1807 98.7 9e-16
>seq25901
Length=46880
Score = 111 bits (122), Expect = 1e-19
Identities = 109/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 15888 AAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTT 15947
||||||| ||| |||| || ||||| || || | | || |||||| | | ||
Sbjct 16116 AAAAATCTGCATCCAGAGTGAAGACATTGTCCATTGTTTCTGCCATAACAGCAAAACGTT 16057
Query 15948 GATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCA 16007
||||||| ||| | ||| ||||||||||||||||||||||||| |||||||| ||||
Sbjct 16056 GATATTCTGAAACCCGCTTCTCAAAGAAATTTGTTTTTCCTTCTAGAGAAATATTCTCCA 15997
Query 16008 TAAAATCAAAAGGATTTTTTG 16028
| |||||||||||||||| ||
Sbjct 15996 TGAAATCAAAAGGATTTTCTG 15976
Score = 107 bits (118), Expect = 2e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318
|| || || || || | || || || || || || || ||||| || |||| || ||
Sbjct 11023 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCTTC 10964
Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378
| |||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| |||
Sbjct 10963 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 10904
Query 16379 ACCAATCGCTCACC 16392
|||| || ||||||
Sbjct 10903 ACCACTCTCTCACC 10890
>seq1807
Length=48173
Score = 98.7 bits (108), Expect = 9e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318
||||| ||||| || | || || ||||| || || || ||||||| ||||| ||| ||
Sbjct 45219 TCGTCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 45278
Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378
| |||||| || | ||||| || ||||||||||| || ||||| ||||| ||||| ||
Sbjct 45279 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGCT 45338
Query 16379 ACCAATCGCTCACC 16392
|| | ||| || ||
Sbjct 45339 ACTACTCGTTCTCC 45352
Score = 82.4 bits (90), Expect = 7e-11
Identities = 77/98 (79%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 15926 TTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTT 15985
|| ||||| ||| ||| | |||||||||| |||| ||| ||||||||||| || ||
Sbjct 43915 TTCGACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTG 43974
Query 15986 CCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATT 16023
||||| | || || |||||||| || |||||||||||
Sbjct 43975 CCTTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 44012
Score = 82.4 bits (90), Expect = 7e-11
Identities = 86/113 (76%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 16490 TCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTC 16549
||||| |||| ||| || || || || || | ||| |||||||||||||| || ||
Sbjct 47374 TCTTTAGAATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATGTTT 47433
Query 16550 TCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602
||||| || ||||| || ||||| || || | |||||| | |||||||||||
Sbjct 47434 TCCATGGCAATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTC 47486
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462202747132600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |