Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20
2014-06-25] 53,491 sequences; 1,127,622,302 total letters
Query= NC_002665.1
Length=108873
Score E
Sequences producing significant alignments: (Bits) Value
seq9186 342 4e-89
seq25356 91.5 1e-13
>seq9186
Length=1033
Score = 342 bits (378), Expect = 4e-89
Identities = 619/902 (69%), Gaps = 20/902 (2%)
Strand=Plus/Plus
Query 107675 GTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGT 107734
|||||| ||||||| ||||| | || ||| ||| ||||| || |||||||| |||||
Sbjct 130 GTTCATTGAGTTCCCGCTGAGCCAGGAGGAGGCAGAGTTCCCTATCGCCTACTCCATGGT 189
Query 107735 GGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAA 107794
|||| | || || || | || || ||||| ||||| || |||| |||||| |||
Sbjct 190 CATCCACAACAAAATCGAGATGTTCGAGCGGCTCCTGCGGTCCCTGTACGCCCCTACGAA 249
Query 107795 CATATACTGTGTCCACGTGGATG---------TGA-----AGTCCCCAGAGACTTTCAAA 107840
| | ||||| | || | | || ||| ||||||| | | ||| |
Sbjct 250 CGTCTACTGCGGCCCCATTGACAGCACGTCATTGACAGCAAGTCCCCGGCCGCCTTCCAG 309
Query 107841 GAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTC 107900
||||| || ||||||| | | ||||||||||||||||| |||| || |||
Sbjct 310 GAGGCCGTGCGGGCCATTGTAGCTTGCTTCCCCAATGTCTTTGTGGCTAGCCGCCTGGAA 369
Query 107901 CCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTG 107960
|||||| ||||||||||||||| | |||| || ||||| ||||| ||| | ||| ||
Sbjct 370 AAGGTGGTCTATGCCTCCTGGTCCCGGCTGCAGGCCGACCTCAACTGCATGCAGGACCTG 429
Query 107961 CTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATA 108020
| |||||| | ||||||||| ||| | || || || ||||| || || ||||||||
Sbjct 430 TTGCAGAGCCCTGTGCCATGGCGCTACGTCCTCAACACCTGCGGCACCGATTTCCCCATC 489
Query 108021 AAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAG 108080
|| ||||| |||||||| |||| | ||| ||| || || |||| |||||| ||||||
Sbjct 490 AAAACCAACGCCGAGATCGTCCGTGTCCTGAAGGTGCTGCAGGGGCGGAACAGCATGGAG 549
Query 108081 TCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGAC 108140
|| ||| || || | | ||| | |||||| | |||| | || | ||| ||
Sbjct 550 TCAGAGAAGCCCTCGGCCTTCAAGCGGGAGCGCTGGCAGTACCACCATAAAGTGGGGGAG 609
Query 108141 ACACTGTACCCTACCAGCA-AGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCAC 108199
| | || || || ||| ||| || || || | || | |||||||||||
Sbjct 610 TTCATCTTCCGGACAGCCACAGA-GAAACTGCCACCACCCCACAACTCTCCCATGTTCAC 668
Query 108200 AGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAA 108259
||| || || || | ||| | | || ||||| || || || |||| || ||||| |
Sbjct 669 AGGCAACGCGTACATCCTGGTCACGCGGGCCTTCGTGCAGCACATCTTTGAGAACCCCAC 728
Query 108260 ATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGC 108319
| || | | || |||| ||| |||||||| ||||| ||||| ||| |||||||
Sbjct 729 GGCGCAGCAGTTCCTCGAGTGGGCCAAGGACACCTACAGCCCTGACGAGCACGTCTGGGC 788
Query 108320 CACCCTTCAGCG--TGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCAC 108377
|||||| | || ||| | | | |||| ||| | | || || ||||| ||
Sbjct 789 CACCCTCAACCGCATGCCCGGCG--TGCCAGGCGCCATGCCGCAGAACGACAAGTTCCAG 846
Query 108378 ATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTC 108437
|||| ||||||| ||| | || | || || ||||||||||||| ||||| || |
Sbjct 847 CTCTCGGACATGAACGCCTTGCCCCGCCTGGTGAAGTGGCAGTACCTGGAGGGCGACACC 906
Query 108438 AGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTAC 108497
|||| ||| ||||| || |||||||| | || || | | | ||| ||||||| |||
Sbjct 907 AGCAAGGGCGCGCCCTACCCACCCTGCACCGGCCAGCACCAGCGCGCCGTCTGCATCTAC 966
Query 108498 GGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557
|||| || ||| || |||||| || ||| | || ||||||||||| |||||||| |||
Sbjct 967 GGGGTGGGCGACGTGCCCTGGATGCTGCAGCAGCACCACCTCTTGGCCAACAAGTTCGAC 1026
Query 108558 CC 108559
||
Sbjct 1027 CC 1028
>seq25356
Length=16095
Score = 91.5 bits (100), Expect = 1e-13
Identities = 228/343 (66%), Gaps = 4/343 (1%)
Strand=Plus/Plus
Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747
|| || || || ||||| ||| || || ||||| ||||| || ||||| || | ||
Sbjct 8471 CCTCTCAGCAATGAAGAAGCAGAATTTCCGATTGCTTACTCAATAGTGGTTTATCACAAA 8530
Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807
|| || | |||| | || || || | | |||||||||||||| | ||||| |
Sbjct 8531 ATAGAGATGCTTGATAGACTTCTAAGATCAATTTATGCCCCTCAGAATTTTTACTGCATT 8590
Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867
|| || || |||||| ||||| |||| | || || |||| || | || ||
Sbjct 8591 CATGTTGACAAGAAGTCTCCAGAATCTTTTTTTGCTGCTGTGAAGGGAATAGTCTCATGT 8650
Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927
|| |||||||| || |||| |||| | || || ||||| || ||| |||
Sbjct 8651 TTTGATAATGTCTTTATTTCCAGCCAGTTAGAGAGTGTTGTGTATGCTTCATGGAGCAGG 8710
Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985
||||| || ||| | ||||| ||| |||| || | |||| ||| | | ||||| |
Sbjct 8711 GTGCAGGCAGACATTAACTGCATGAAAGATCTG-TACAGA-AGAAGTTCAAACTGGAAAT 8768
Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028
|| || | || ||||| | ||||| || |||||||||||
Sbjct 8769 ACCTAATAAACCTCTGCGGCATGGACTTTCCTATAAAGACCAA 8811
Score = 86.0 bits (94), Expect = 4e-12
Identities = 194/288 (67%), Gaps = 8/288 (3%)
Strand=Plus/Plus
Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333
|||| |||| |||||||| || ||||| || ||| | || ||||| || ||||| |
Sbjct 9060 TTGAGTGGGCAAAAGACACTTACAGCCCAGATGAATATCTGTGGGCAACAATTCAGAGAA 9119
Query 108334 CTCCGTGGA-TGCCTGGCTCTGTTCCT---AGCCACCCCAAGTATCACATCTCAGACATG 108389
||| || | | || || | ||| || || || ||||| | | || ||||||
Sbjct 9120 -TCCCTGAAGTCCCAGGTGCAGTTTCTTCTAGTGAC---AAGTACGATGTTTCTGACATG 9175
Query 108390 ACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCG 108449
| ||| | ||||| | ||||||||||||||| ||||| ||||| || || ||
Sbjct 9176 AATGCACTGGCCAGATTTGTCAAGTGGCAGTACTTTGAGGGTGATGTGTCCAAAGGTGCA 9235
Query 108450 CCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGAC 108509
|| || |||| ||| |||| | || | | |||| ||| |||| || |||
Sbjct 9236 CCCTACCCACCATGCAGTGGAGTTCACATTCGCTCTGTCTGTGTTTTTGGGGTGGGAGAC 9295
Query 108510 CTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557
||| ||||||| || | ||||| ||| | || || || ||||| |||
Sbjct 9296 CTGAACTGGATGCTACGAAACCACCACTTTTTTGCTAATAAGTTCGAC 9343
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 348041756059734
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