Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20 2014-06-25] 53,491 sequences; 1,127,622,302 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq9186 342 4e-89 seq25356 91.5 1e-13 >seq9186 Length=1033 Score = 342 bits (378), Expect = 4e-89 Identities = 619/902 (69%), Gaps = 20/902 (2%) Strand=Plus/Plus Query 107675 GTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGT 107734 |||||| ||||||| ||||| | || ||| ||| ||||| || |||||||| ||||| Sbjct 130 GTTCATTGAGTTCCCGCTGAGCCAGGAGGAGGCAGAGTTCCCTATCGCCTACTCCATGGT 189 Query 107735 GGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAA 107794 |||| | || || || | || || ||||| ||||| || |||| |||||| ||| Sbjct 190 CATCCACAACAAAATCGAGATGTTCGAGCGGCTCCTGCGGTCCCTGTACGCCCCTACGAA 249 Query 107795 CATATACTGTGTCCACGTGGATG---------TGA-----AGTCCCCAGAGACTTTCAAA 107840 | | ||||| | || | | || ||| ||||||| | | ||| | Sbjct 250 CGTCTACTGCGGCCCCATTGACAGCACGTCATTGACAGCAAGTCCCCGGCCGCCTTCCAG 309 Query 107841 GAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTC 107900 ||||| || ||||||| | | ||||||||||||||||| |||| || ||| Sbjct 310 GAGGCCGTGCGGGCCATTGTAGCTTGCTTCCCCAATGTCTTTGTGGCTAGCCGCCTGGAA 369 Query 107901 CCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTG 107960 |||||| ||||||||||||||| | |||| || ||||| ||||| ||| | ||| || Sbjct 370 AAGGTGGTCTATGCCTCCTGGTCCCGGCTGCAGGCCGACCTCAACTGCATGCAGGACCTG 429 Query 107961 CTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATA 108020 | |||||| | ||||||||| ||| | || || || ||||| || || |||||||| Sbjct 430 TTGCAGAGCCCTGTGCCATGGCGCTACGTCCTCAACACCTGCGGCACCGATTTCCCCATC 489 Query 108021 AAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAG 108080 || ||||| |||||||| |||| | ||| ||| || || |||| |||||| |||||| Sbjct 490 AAAACCAACGCCGAGATCGTCCGTGTCCTGAAGGTGCTGCAGGGGCGGAACAGCATGGAG 549 Query 108081 TCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGAC 108140 || ||| || || | | ||| | |||||| | |||| | || | ||| || Sbjct 550 TCAGAGAAGCCCTCGGCCTTCAAGCGGGAGCGCTGGCAGTACCACCATAAAGTGGGGGAG 609 Query 108141 ACACTGTACCCTACCAGCA-AGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCAC 108199 | | || || || ||| ||| || || || | || | ||||||||||| Sbjct 610 TTCATCTTCCGGACAGCCACAGA-GAAACTGCCACCACCCCACAACTCTCCCATGTTCAC 668 Query 108200 AGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAA 108259 ||| || || || | ||| | | || ||||| || || || |||| || ||||| | Sbjct 669 AGGCAACGCGTACATCCTGGTCACGCGGGCCTTCGTGCAGCACATCTTTGAGAACCCCAC 728 Query 108260 ATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGC 108319 | || | | || |||| ||| |||||||| ||||| ||||| ||| ||||||| Sbjct 729 GGCGCAGCAGTTCCTCGAGTGGGCCAAGGACACCTACAGCCCTGACGAGCACGTCTGGGC 788 Query 108320 CACCCTTCAGCG--TGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCAC 108377 |||||| | || ||| | | | |||| ||| | | || || ||||| || Sbjct 789 CACCCTCAACCGCATGCCCGGCG--TGCCAGGCGCCATGCCGCAGAACGACAAGTTCCAG 846 Query 108378 ATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTC 108437 |||| ||||||| ||| | || | || || ||||||||||||| ||||| || | Sbjct 847 CTCTCGGACATGAACGCCTTGCCCCGCCTGGTGAAGTGGCAGTACCTGGAGGGCGACACC 906 Query 108438 AGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTAC 108497 |||| ||| ||||| || |||||||| | || || | | | ||| ||||||| ||| Sbjct 907 AGCAAGGGCGCGCCCTACCCACCCTGCACCGGCCAGCACCAGCGCGCCGTCTGCATCTAC 966 Query 108498 GGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 |||| || ||| || |||||| || ||| | || ||||||||||| |||||||| ||| Sbjct 967 GGGGTGGGCGACGTGCCCTGGATGCTGCAGCAGCACCACCTCTTGGCCAACAAGTTCGAC 1026 Query 108558 CC 108559 || Sbjct 1027 CC 1028 >seq25356 Length=16095 Score = 91.5 bits (100), Expect = 1e-13 Identities = 228/343 (66%), Gaps = 4/343 (1%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || || || ||||| ||| || || ||||| ||||| || ||||| || | || Sbjct 8471 CCTCTCAGCAATGAAGAAGCAGAATTTCCGATTGCTTACTCAATAGTGGTTTATCACAAA 8530 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 || || | |||| | || || || | | |||||||||||||| | ||||| | Sbjct 8531 ATAGAGATGCTTGATAGACTTCTAAGATCAATTTATGCCCCTCAGAATTTTTACTGCATT 8590 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || || || |||||| ||||| |||| | || || |||| || | || || Sbjct 8591 CATGTTGACAAGAAGTCTCCAGAATCTTTTTTTGCTGCTGTGAAGGGAATAGTCTCATGT 8650 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 || |||||||| || |||| |||| | || || ||||| || ||| ||| Sbjct 8651 TTTGATAATGTCTTTATTTCCAGCCAGTTAGAGAGTGTTGTGTATGCTTCATGGAGCAGG 8710 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 ||||| || ||| | ||||| ||| |||| || | |||| ||| | | ||||| | Sbjct 8711 GTGCAGGCAGACATTAACTGCATGAAAGATCTG-TACAGA-AGAAGTTCAAACTGGAAAT 8768 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 || || | || ||||| | ||||| || ||||||||||| Sbjct 8769 ACCTAATAAACCTCTGCGGCATGGACTTTCCTATAAAGACCAA 8811 Score = 86.0 bits (94), Expect = 4e-12 Identities = 194/288 (67%), Gaps = 8/288 (3%) Strand=Plus/Plus Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333 |||| |||| |||||||| || ||||| || ||| | || ||||| || ||||| | Sbjct 9060 TTGAGTGGGCAAAAGACACTTACAGCCCAGATGAATATCTGTGGGCAACAATTCAGAGAA 9119 Query 108334 CTCCGTGGA-TGCCTGGCTCTGTTCCT---AGCCACCCCAAGTATCACATCTCAGACATG 108389 ||| || | | || || | ||| || || || ||||| | | || |||||| Sbjct 9120 -TCCCTGAAGTCCCAGGTGCAGTTTCTTCTAGTGAC---AAGTACGATGTTTCTGACATG 9175 Query 108390 ACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCG 108449 | ||| | ||||| | ||||||||||||||| ||||| ||||| || || || Sbjct 9176 AATGCACTGGCCAGATTTGTCAAGTGGCAGTACTTTGAGGGTGATGTGTCCAAAGGTGCA 9235 Query 108450 CCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGAC 108509 || || |||| ||| |||| | || | | |||| ||| |||| || ||| Sbjct 9236 CCCTACCCACCATGCAGTGGAGTTCACATTCGCTCTGTCTGTGTTTTTGGGGTGGGAGAC 9295 Query 108510 CTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||| ||||||| || | ||||| ||| | || || || ||||| ||| Sbjct 9296 CTGAACTGGATGCTACGAAACCACCACTTTTTTGCTAATAAGTTCGAC 9343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348041756059734