Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20
2014-06-25] 53,491 sequences; 1,127,622,302 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq11560 120 3e-22
seq16976 105 6e-18
>seq11560
Length=34702
Score = 120 bits (132), Expect = 3e-22
Identities = 116/149 (78%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107
||||| |||||| || ||||| || ||||| |||||||||||||| || || || ||
Sbjct 9802 ACCTCATCTTTGCTGGTATACTCCACTATTTCTGTACATAGATTGCTGCATTTGATGGTC 9743
Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167
||||| || ||| ||||| || || ||||| || || ||||| |||||||||||||||
Sbjct 9742 CCCAAGTTCTGCTGATTGCTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGCGTG 9683
Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196
|| ||||| ||| || || ||||| ||
Sbjct 9682 CCGGTCTCTGTCTGAGATTCAATGATAGC 9654
>seq16976
Length=50896
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || || || ||||| ||||||||||| || |||||| |||| ||||| ||
Sbjct 49982 CATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACAATCACCCTCGAGGTTGAGCCCAG 49923
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | || | || || | ||| ||||||||||||| | || || || ||
Sbjct 49922 TGACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGATCA 49863
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | | || ||||||||||| ||| | ||||| || || || || ||
Sbjct 49862 GCAGAGGTTGATCTTCGCTGGCAAGCAGCTAGAAGATGGCCGCACCCTGTCTGACTACAA 49803
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||| || || ||||| || |||||||| || || | |||||||| ||
Sbjct 49802 CATCCAGAAGGAATCCACCCTTCATCTTGTGCTGCGCCTGAGGGGTGG 49755
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || || || ||||| ||||||||||| || |||||| |||| ||||| ||
Sbjct 50438 CATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACAATCACCCTCGAGGTTGAGCCCAG 50379
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | || | || || | ||| ||||||||||||| | || || || ||
Sbjct 50378 TGACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGATCA 50319
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | | || ||||||||||| ||| | ||||| || || || || ||
Sbjct 50318 GCAGAGGTTGATCTTCGCTGGCAAGCAGCTAGAAGATGGCCGCACCCTGTCTGACTACAA 50259
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| || || ||||| || |||||||| || ||
Sbjct 50258 CATCCAGAAGGAATCCACCCTTCATCTTGTGCT 50226
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || || || ||||| ||||| ||||| || |||||| |||| ||||| ||
Sbjct 50210 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAG 50151
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | || | || || | ||| ||||||||||||| | || || || ||
Sbjct 50150 TGACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGATCA 50091
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | | || ||||||||||| ||| ||||||| || || || || ||
Sbjct 50090 GCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 50031
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| || || ||||| || ||||| || || ||
Sbjct 50030 CATCCAGAAGGAATCTACCCTTCACCTTGTGCT 49998
Score = 87.8 bits (96), Expect = 2e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248
||||||||| || || || ||||| |||| ||||| || || ||| |||| ||||| ||
Sbjct 50669 AAACATGCAGATCTTTGTGAAGACCATGACTGGCAAGACCATAACCCTCGAGGTTGAGCC 50610
Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308
|||| | || | || || | ||| ||||||||||||| | || || ||
Sbjct 50609 CAGTGACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGA 50550
Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368
|||||| | | || ||||||||||| ||| ||||||| || || || ||
Sbjct 50549 TCAGCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTA 50490
Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||||| || || ||||| || ||||| || || ||
Sbjct 50489 CAACATCCAGAAGGAATCTACCCTTCACCTTGTGCT 50454
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445468343868720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |