Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20
2014-06-25] 53,491 sequences; 1,127,622,302 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq25901 123 3e-23
seq1807 114 2e-20
seq11560 96.9 4e-15
seq22466 84.2 3e-11
>seq25901
Length=46880
Score = 123 bits (136), Expect = 3e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663
|||| ||||| ||||| | ||| || || || || ||||| ||||| ||||| | ||| |
Sbjct 11025 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCT 10966
Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723
| ||||||||||| | ||| || || || ||||||||||| ||||| |||||||||||||
Sbjct 10965 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 10906
Query 33724 CAATAAGTCTCTCTCC 33739
||| | |||||| ||
Sbjct 10905 CAACCACTCTCTCACC 10890
Score = 84.2 bits (92), Expect = 3e-11
Identities = 73/91 (80%), Gaps = 0/91 (0%)
Strand=Plus/Minus
Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025
|| |||||||| || |||||||| |||||||||||||| |||| ||||| |||||
Sbjct 6230 AAGTTTTCATTTACAATTCCATCGCTGGCTGCAAAAAAAGCCAGAACATGAGAGATAAAG 6171
Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAAT 34056
|||||||| |||| | | || || |||||||
Sbjct 6170 TATTTTTCATCTGCTTTCAGCTTGTTCCAAT 6140
>seq1807
Length=48173
Score = 114 bits (126), Expect = 2e-20
Identities = 98/121 (81%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663
||||||||||||| || | ||| |||||||| |||||||| ||||||| || | || |
Sbjct 45217 CCTCGTCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 45276
Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723
| |||||||| || || || || || || ||||||||||||||||| ||||| ||||| |
Sbjct 45277 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 45336
Query 33724 C 33724
|
Sbjct 45337 C 45337
Score = 82.4 bits (90), Expect = 1e-10
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 33276 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33335
||||| |||||||| | || |||||||| || || || || || ||||| || || |||
Sbjct 43918 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 43977
Query 33336 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33370
|||| || || ||||||||||| ||||| |||||
Sbjct 43978 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 44012
>seq11560
Length=34702
Score = 96.9 bits (106), Expect = 4e-15
Identities = 111/147 (76%), Gaps = 2/147 (1%)
Strand=Plus/Minus
Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGT 63326
||||| ||||| ||||||||||||||||| || || | || || ||||| | || ||
Sbjct 8440 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 8381
Query 63327 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63385
||||| || || || ||||| |||||| || || ||| | | || || ||||||| ||
Sbjct 8380 TCCTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATGG 8322
Query 63386 TTCCAAGTATATGGCCATAACTCCAgg 63412
|||| ||| ||||| | | |||||||
Sbjct 8321 CTCCAGGTAGATGGCAAAAGCTCCAGG 8295
Score = 89.7 bits (98), Expect = 6e-13
Identities = 139/199 (70%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685
||||||| ||||| ||||||| || || || |||| ||| || || || || |||||||
Sbjct 12176 CATATGTTTCATACGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCGT 12117
Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745
|||||||||| ||||| |||| || || | || || || || || ||||| || |
Sbjct 12116 AATAAATGGTCTCAAAAATCTGCTGGTTCAAGCGCTGGGCCTCGGGACTTTCAAAGGGGT 12057
Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805
| | | | || || || || || | || || |||||||| || || || | ||| |
Sbjct 12056 ACCTCATCAAGATGAAAGCATCTGCCAGGCCCTGCACACCAATGCCAATGGGACGATGGC 11997
Query 62806 TCTTATTAGAGATTTCAGC 62824
| || ||| ||||||
Sbjct 11996 GTCTGTTGGAGCGTTCAGC 11978
>seq22466
Length=8750
Score = 84.2 bits (92), Expect = 3e-11
Identities = 87/114 (76%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 188494 TTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTTCTTGC 188553
||||||||||| | ||||| | ||||| || || | |||||||| || |||||||
Sbjct 6250 TTTCTATGATGTGTCCATCGTCTTGCAAGCCTTTATTCTTACTACTGCTGTATTTCTTGG 6309
Query 188554 TCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607
|||||| ||| ||| | || ||||||||||| ||||| ||| ||| | ||||
Sbjct 6310 ACTGACTGCATATACCTTGCAGTCAAAGAGAGACTTCAGCAAATTTGGAGCAGG 6363
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629396480334480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |