Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20
2014-06-25] 53,491 sequences; 1,127,622,302 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq25901 120 4e-22
seq1807 114 2e-20
seq22466 111 2e-19
seq11560 96.9 5e-15
>seq25901
Length=46880
Score = 120 bits (132), Expect = 4e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| |
Sbjct 11025 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCT 10966
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| ||||||||||| | ||||| || || |||||||| || ||||| ||||| |||||||
Sbjct 10965 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 10906
Query 36300 CAATAAGTCTCTCTCC 36315
||| | |||||| ||
Sbjct 10905 CAACCACTCTCTCACC 10890
>seq1807
Length=48173
Score = 114 bits (126), Expect = 2e-20
Identities = 98/121 (81%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
||||||||||||| || | ||| || ||||| |||||||| ||||||| || | || |
Sbjct 45217 CCTCGTCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 45276
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||| |
Sbjct 45277 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 45336
Query 36300 C 36300
|
Sbjct 45337 C 45337
>seq22466
Length=8750
Score = 111 bits (122), Expect = 2e-19
Identities = 93/114 (82%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539
|||||||||| ||| ||||| ||||||||||| || | |||||||||||||| |||||
Sbjct 6363 CCTGCTCCAAATTTGCTGAAGTCTCTCTTTGACTGCAAGGTATATGCAGTCAGTCCAAGA 6304
Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAA 9593
|| || |||||||| || || || ||||||| |||| |||||||||||||
Sbjct 6303 AATACAGCAGTAGTAAGAATAAAGGCTTGCAAGACGATGGACACATCATAGAAA 6250
Score = 111 bits (122), Expect = 2e-19
Identities = 141/194 (73%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 9228 TATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCC 9287
||||| |||||| || |||| | | | | ||| || ||||||||||||||||| |||
Sbjct 7668 TATTTTTTATTAAATGCTTCTAGTAAACGCAGCAGGTGTAAGAACAGATTGATGATGTCC 7609
Query 9288 AAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAG 9347
||||||| |||||| | || | | || |||||||| || | || || || || |
Sbjct 7608 AAGTAGAGATTGATTGCAGCCAGTATGTACTCTTCAGGGGATAATTTGTGCATCAGCAAA 7549
Query 9348 TGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGC 9407
|| |||||||| ||||| ||||| ||||| | ||| || || ||||| | |||| |
Sbjct 7548 TGAGTGTCATAAATAATAAATCCACAGAACAGAAGAGCTCCGGCAGCAGCAAACACCAAC 7489
Query 9408 TCCACTGTTTCACT 9421
|| | ||| |||||
Sbjct 7488 TCTATTGTCTCACT 7475
>seq11560
Length=34702
Score = 96.9 bits (106), Expect = 5e-15
Identities = 111/147 (76%), Gaps = 2/147 (1%)
Strand=Plus/Minus
Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGT 66119
||||| ||||| ||||||||||||||||| || || | || | ||||||| || ||
Sbjct 8440 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 8381
Query 66120 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCATAATGCCACGG 66178
||||| || || || ||||| |||||| || || ||| | | || || ||||||| ||
Sbjct 8380 TCCTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATGG 8322
Query 66179 TTCCAAGTATATGGCCATAACTCCAGG 66205
|||| ||| ||||| | | |||||||
Sbjct 8321 CTCCAGGTAGATGGCAAAAGCTCCAGG 8295
Score = 84.2 bits (92), Expect = 3e-11
Identities = 118/166 (71%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858
|||| |||| ||| || ||||||||||| | ||| || || || || || || || | |
Sbjct 2388 CACTGAATACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATCCTCGCTGCCAGGA 2329
Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918
| ||||| || || |||| || || || || ||| |||| || ||||| || ||||
Sbjct 2328 TAGCATAGTCAGGGTGTTTGGTGGTCAGGGTTGCAGCTGTTTCAGCAGCCAGCGTATCCA 2269
Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964
||| ||||| || || ||| | || | || || || || |||||
Sbjct 2268 GTTCCACCGTCGTGACACCACTGTACAGCCCCTGAATCACTTTCAT 2223
Score = 84.2 bits (92), Expect = 3e-11
Identities = 138/199 (69%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478
||||||| || || ||||||| || || || |||||||| || || || || |||||||
Sbjct 12176 CATATGTTTCATACGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCGT 12117
Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538
|||||||||| || || |||| || || | || || || | || ||||| || |
Sbjct 12116 AATAAATGGTCTCAAAAATCTGCTGGTTCAAGCGCTGGGCCTCGGGACTTTCAAAGGGGT 12057
Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598
| | | | || || || ||||| | || || |||||||| || || || | ||| |
Sbjct 12056 ACCTCATCAAGATGAAAGCATCTGCCAGGCCCTGCACACCAATGCCAATGGGACGATGGC 11997
Query 65599 TCTTATTAGAGATTTCAGC 65617
| || ||| ||||||
Sbjct 11996 GTCTGTTGGAGCGTTCAGC 11978
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657732720984440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |