Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20
2014-06-25] 53,491 sequences; 1,127,622,302 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq25901 132 7e-26
seq1807 129 8e-25
seq11560 104 3e-17
>seq25901
Length=46880
Score = 132 bits (146), Expect = 7e-26
Identities = 111/136 (82%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041
|||| ||||| ||||| ||||| ||||| || || ||||| ||||| ||||| | ||| |
Sbjct 11025 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCT 10966
Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101
| ||||||||||| | ||||| || || ||||||||||| ||||| ||||| |||||||
Sbjct 10965 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 10906
Query 50102 CAACAAGTCTCTCTCC 50117
|||| | |||||| ||
Sbjct 10905 CAACCACTCTCTCACC 10890
>seq1807
Length=48173
Score = 129 bits (142), Expect = 8e-25
Identities = 110/136 (81%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041
||||||||||||| || ||||| || ||||| |||||||| ||||||| || | || |
Sbjct 45217 CCTCGTCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 45276
Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101
| |||||||| || || ||||| || |||||||||||||||||||| ||||| ||||| |
Sbjct 45277 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 45336
Query 50102 CAACAAGTCTCTCTCC 50117
| || | || |||||
Sbjct 45337 CTACTACTCGTTCTCC 45352
>seq11560
Length=34702
Score = 104 bits (114), Expect = 3e-17
Identities = 114/149 (77%), Gaps = 2/149 (1%)
Strand=Plus/Minus
Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998
||||| ||||| ||||||||||||||||| || || | || || ||||||| || |||
Sbjct 8440 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 8381
Query 79999 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 80057
||||| || || || ||||| |||||| || || ||| | | || || ||||||| ||
Sbjct 8380 TCCTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATGG 8322
Query 80058 TTCCAAGTATATGGCCATAACTCCCGGTC 80086
|||| ||| ||||| | | |||| ||||
Sbjct 8321 CTCCAGGTAGATGGCAAAAGCTCCAGGTC 8293
Score = 84.2 bits (92), Expect = 3e-11
Identities = 124/176 (70%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359
||||||||||| ||||||| || | ||| | |||||| || || || || || ||||||
Sbjct 12174 TATGTTTCATACGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCGTAA 12115
Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419
|||||||| || ||||||| || || | || || || | || ||||| || ||
Sbjct 12114 TAAATGGTCTCAAAAATCTGCTGGTTCAAGCGCTGGGCCTCGGGACTTTCAAAGGGGTAC 12055
Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 79475
| | | || || || ||||| | || || |||||||| || || || | |||
Sbjct 12054 CTCATCAAGATGAAAGCATCTGCCAGGCCCTGCACACCAATGCCAATGGGACGATG 11999
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 717788538545240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |