Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20 2014-06-25] 53,491 sequences; 1,127,622,302 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq16976 107 1e-18 >seq16976 Length=50896 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||||||||| | | || | |||||||||||| || || || |||||||| || Sbjct 50209 TGCCACCTCTCAAACGCAGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAG 50268 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | | | ||||||| || ||||||||| | ||||| | || || || | Sbjct 50269 ACAGGGTGCGGCCATCTTCTAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGG 50328 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| ||||| ||||| |||||| ||| ||| | || ||||| || || || | Sbjct 50329 GAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAA 50388 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | ||| || || || |||||||| || || ||||| || ||||| Sbjct 50389 CCTCGAGGGTGATTGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 50437 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15136 GCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCT 15195 |||||| |||| | | || | |||||||||||| || || || |||||||| || Sbjct 49754 GCCACCCCTCAGGCGCAGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGA 49813 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 || | | | ||||||| || ||||||||| | ||||| | || || || || Sbjct 49814 CAGGGTGCGGCCATCTTCTAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGG 49873 Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||| ||||| ||||| |||||| ||| ||| | || ||||| || || || || Sbjct 49874 AATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAAC 49933 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| || || || |||||||| || || ||||| || ||||| Sbjct 49934 CTCGAGGGTGATTGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 49981 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||||||||| | | || | |||||||| || || || || |||||||| || Sbjct 49981 TGCCACCTCTCAAACGCAGCACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCAG 50040 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | | | ||||| | || ||||||||| | ||||| | || || || | Sbjct 50041 ACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGG 50100 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| ||||| ||||| |||||| ||| ||| | || ||||| || || || | Sbjct 50101 GAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAA 50160 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | ||| ||||| || || ||||| || || ||||| || ||||| Sbjct 50161 CCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 50209 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||||||||| | | || | |||||||| || || || || |||||||| || Sbjct 50437 TGCCACCTCTCAAACGCAGCACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCAG 50496 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | | | ||||| | || ||||||||| | ||||| | || || || | Sbjct 50497 ACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGG 50556 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| ||||| ||||| |||||| ||| ||| | || ||||| || || || | Sbjct 50557 GAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAA 50616 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 | || | ||| ||||| || || |||| || || ||||| || ||||| ||| Sbjct 50617 CCTCGAGGGTTATGGTCTTGCCAGTCATGGTCTTCACAAAGATCTGCATGTTT 50669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361943087570031