Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20
2014-06-25] 53,491 sequences; 1,127,622,302 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq13374 159 5e-34
seq9450 109 8e-19
>seq13374
Length=24841
Score = 159 bits (176), Expect = 5e-34
Identities = 222/310 (72%), Gaps = 1/310 (0%)
Strand=Plus/Plus
Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738
|||| || | || ||||| ||||| || ||| | |||| || ||| | | ||
Sbjct 19273 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCGG 19332
Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798
| || | || |||| ||||| | ||| ||||||||||| || |||||||| | ||||
Sbjct 19333 TATTAATTATTTCAAAGCCCACTTTTCCACCGAAGGTGCTTGGCTTCCAGTACTCAGGGG 19392
Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858
||||||| | || |||| || ||||| ||||| |||||||| || | ||| | ||
Sbjct 19393 AGCAGATTGCATTTCCCATCAGTCCTTTCAGGGAGAACGGAGCTCCAATCTCCACCATTG 19452
Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918
| ||||| |||||||| || || ||||| || || | || || | |||| |||||
Sbjct 19453 TTTCACCAAAGATGGCACCTGGTCGTGGCTTCTCTACGAGGAGGCCTGGATACAGCTCCA 19512
Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT-T 8977
||| ||||||||||| ||||| | ||||| || || ||||| |||||||||||
Sbjct 19513 TAGCATCGATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTAA 19572
Query 8978 TTATTAATAA 8987
||||| ||||
Sbjct 19573 TTATTGATAA 19582
Score = 131 bits (144), Expect = 2e-25
Identities = 174/242 (72%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681
||||||| || || || || || || || ||| ||| |||||||| || |||||||
Sbjct 21299 ATGAGTCTCGTTGTTTGGAAGAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 21358
Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741
| ||| || || | |||||||||||| ||||| || ||||| |||||||| | || ||
Sbjct 21359 ATATCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAGCCTGGG 21418
Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801
|||| ||||| |||| || ||||| | | ||| | ||| || || | |||||
Sbjct 21419 ACCAAACCAAACACCTCCTGCCCGACCGAAAACTGCAAGTGTTCAGGTACGTGAGGAGGG 21478
Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861
|||||||| | |||| || || || | || ||||||||||| || ||||| |||
Sbjct 21479 TAGATCATCTCTGCCTGAGTGTCCTTCACAGTTGGTGGATACATTTCTCCATCAATCATC 21538
Query 9862 TG 9863
||
Sbjct 21539 TG 21540
Score = 86.0 bits (94), Expect = 9e-12
Identities = 115/160 (72%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 10289 ACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 10348
|||||| || || | || |||||||| || | || || || || | |||| |||
Sbjct 23175 ACCTTTAACACCCATTGGTGTTGGACAGTCAAGTCCTACTGGTGGAAGGCTTCTTGTGTA 23234
Query 10349 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGG 10408
|||||| |||||||| |||||||||||||| ||| || || |||||| | ||
Sbjct 23235 ATAGGAAAGATTGGAATAAGCTTCCCAGCTTTTGTAACTATAATCACTGTTGTAAGTTGG 23294
Query 10409 AGGGCTGTCAATCAAATCGGATCTACCTGAACAAGCAAAA 10448
|||||||||||||| | ||||| ||| | ||| ||||
Sbjct 23295 TGGGCTGTCAATCAAGTGTGATCTTGCTGGAAAAGAAAAA 23334
>seq9450
Length=17847
Score = 109 bits (120), Expect = 8e-19
Identities = 131/178 (74%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 8763 CTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGC 8822
|||| ||||| || |||||||||||||| | || ||||||||| ||| | | || |
Sbjct 4821 CTCCACCGAATGTACTGGGTTTCCAGTACTCTGGAGAGCAGATGGGGTTTCCAAGAAGCC 4762
Query 8823 CTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGAC 8882
| || |||||||||||||| || | ||| | ||||| ||||| || || | |||||
Sbjct 4761 CCTTCAGGGAAAACGGAGCTCCGATCTCCACCATGCTTTCACCAAAAATACCATTGGGTT 4702
Query 8883 GGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAG 8940
|||| || || | ||| || || || ||||||| ||| || |||||||| || ||
Sbjct 4701 GGGGTTTCTCAAGCAACAAGCCCAGATAAAACTCCAGAGCATCAATGTCTCCATACAG 4644
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708051053749040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |