Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20 2014-06-25] 53,491 sequences; 1,127,622,302 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq13374 159 5e-34 seq9450 109 8e-19 >seq13374 Length=24841 Score = 159 bits (176), Expect = 5e-34 Identities = 222/310 (72%), Gaps = 1/310 (0%) Strand=Plus/Plus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||| ||||| || ||| | |||| || ||| | | || Sbjct 19273 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCGG 19332 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | || | || |||| ||||| | ||| ||||||||||| || |||||||| | |||| Sbjct 19333 TATTAATTATTTCAAAGCCCACTTTTCCACCGAAGGTGCTTGGCTTCCAGTACTCAGGGG 19392 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 ||||||| | || |||| || ||||| ||||| |||||||| || | ||| | || Sbjct 19393 AGCAGATTGCATTTCCCATCAGTCCTTTCAGGGAGAACGGAGCTCCAATCTCCACCATTG 19452 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | ||||| |||||||| || || ||||| || || | || || | |||| ||||| Sbjct 19453 TTTCACCAAAGATGGCACCTGGTCGTGGCTTCTCTACGAGGAGGCCTGGATACAGCTCCA 19512 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT-T 8977 ||| ||||||||||| ||||| | ||||| || || ||||| ||||||||||| Sbjct 19513 TAGCATCGATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTAA 19572 Query 8978 TTATTAATAA 8987 ||||| |||| Sbjct 19573 TTATTGATAA 19582 Score = 131 bits (144), Expect = 2e-25 Identities = 174/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| || || || || || || || ||| ||| |||||||| || ||||||| Sbjct 21299 ATGAGTCTCGTTGTTTGGAAGAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 21358 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | ||| || || | |||||||||||| ||||| || ||||| |||||||| | || || Sbjct 21359 ATATCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAGCCTGGG 21418 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| ||||| |||| || ||||| | | ||| | ||| || || | ||||| Sbjct 21419 ACCAAACCAAACACCTCCTGCCCGACCGAAAACTGCAAGTGTTCAGGTACGTGAGGAGGG 21478 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | |||| || || || | || ||||||||||| || ||||| ||| Sbjct 21479 TAGATCATCTCTGCCTGAGTGTCCTTCACAGTTGGTGGATACATTTCTCCATCAATCATC 21538 Query 9862 TG 9863 || Sbjct 21539 TG 21540 Score = 86.0 bits (94), Expect = 9e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 10289 ACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 10348 |||||| || || | || |||||||| || | || || || || | |||| ||| Sbjct 23175 ACCTTTAACACCCATTGGTGTTGGACAGTCAAGTCCTACTGGTGGAAGGCTTCTTGTGTA 23234 Query 10349 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGG 10408 |||||| |||||||| |||||||||||||| ||| || || |||||| | || Sbjct 23235 ATAGGAAAGATTGGAATAAGCTTCCCAGCTTTTGTAACTATAATCACTGTTGTAAGTTGG 23294 Query 10409 AGGGCTGTCAATCAAATCGGATCTACCTGAACAAGCAAAA 10448 |||||||||||||| | ||||| ||| | ||| |||| Sbjct 23295 TGGGCTGTCAATCAAGTGTGATCTTGCTGGAAAAGAAAAA 23334 >seq9450 Length=17847 Score = 109 bits (120), Expect = 8e-19 Identities = 131/178 (74%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 8763 CTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGC 8822 |||| ||||| || |||||||||||||| | || ||||||||| ||| | | || | Sbjct 4821 CTCCACCGAATGTACTGGGTTTCCAGTACTCTGGAGAGCAGATGGGGTTTCCAAGAAGCC 4762 Query 8823 CTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGAC 8882 | || |||||||||||||| || | ||| | ||||| ||||| || || | ||||| Sbjct 4761 CCTTCAGGGAAAACGGAGCTCCGATCTCCACCATGCTTTCACCAAAAATACCATTGGGTT 4702 Query 8883 GGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAG 8940 |||| || || | ||| || || || ||||||| ||| || |||||||| || || Sbjct 4701 GGGGTTTCTCAAGCAACAAGCCCAGATAAAACTCCAGAGCATCAATGTCTCCATACAG 4644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708051053749040