Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20
2014-06-25] 53,491 sequences; 1,127,622,302 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq16976 138 1e-27
>seq16976
Length=50896
Score = 138 bits (152), Expect = 1e-27
Identities = 168/229 (73%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| |||||||| |||| ||| | ||| | ||||||||||| || | ||| || || |
Sbjct 49983 CCACCTCTCAAACGCAGCACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAC 50042
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| | ||| |||||||| || || | ||||| || || ||||||||||| |||
Sbjct 50043 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGA 50102
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| ||||| ||||| | ||||| ||||| || | | |||||| | | || ||
Sbjct 50103 ATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 50162
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|| | |||||||| || ||||| || || |||||||||||||||||||
Sbjct 50163 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGC 50211
Score = 131 bits (144), Expect = 2e-25
Identities = 168/232 (72%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| |||||||| |||| ||| | ||| | ||||||||||| || | ||| || || |
Sbjct 50439 CCACCTCTCAAACGCAGCACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAC 50498
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| | ||| |||||||| || || | ||||| || || ||||||||||| |||
Sbjct 50499 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGA 50558
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| ||||| ||||| | ||||| ||||| || | | |||||| | | || ||
Sbjct 50559 ATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 50618
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTA 95012
|| | || ||||| || ||||| | || |||||||||||||||||| |||
Sbjct 50619 TCGAGGGTTATGGTCTTGCCAGTCATGGTCTTCACAAAGATCTGCATGTTTA 50670
Score = 116 bits (128), Expect = 3e-21
Identities = 163/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| |||||||| |||| ||| | || | || |||||||| || | ||| || || |
Sbjct 50211 CCACCTCTCAAACGCAGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 50270
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| | ||| || ||||| || || | ||||| || || ||||||||||| |||
Sbjct 50271 AGGGTGCGGCCATCTTCTAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGA 50330
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| ||||| ||||| | ||||| ||||| || | | |||||| | | || ||
Sbjct 50331 ATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 50390
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|| | ||||| || || || || || || |||||||||||||||||||
Sbjct 50391 TCGAGGGTGATTGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATGC 50439
Score = 107 bits (118), Expect = 2e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| || |||| |||| ||| | || | || |||||||| || | ||| || || |
Sbjct 49755 CCACCCCTCAGGCGCAGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 49814
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| | ||| || ||||| || || | ||||| || || ||||||||||| |||
Sbjct 49815 AGGGTGCGGCCATCTTCTAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGA 49874
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| ||||| ||||| | ||||| ||||| || | | |||||| | | || ||
Sbjct 49875 ATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 49934
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|| | ||||| || || || || || || |||||||||||||||||||
Sbjct 49935 TCGAGGGTGATTGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATGC 49983
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447991455692760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |