Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20
2014-06-25] 53,491 sequences; 1,127,622,302 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq25901 132 6e-26
seq1807 120 4e-22
seq11560 100 4e-16
>seq25901
Length=46880
Score = 132 bits (146), Expect = 6e-26
Identities = 111/136 (82%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||| ||||| ||||| ||||| ||||| || || ||||| ||||| ||||| | ||| |
Sbjct 11025 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCT 10966
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||||||||| | ||| || || || ||||||||||| ||||| |||||||||||||
Sbjct 10965 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 10906
Query 33446 CAATAAGTCTCTCTCC 33461
||| | |||||| ||
Sbjct 10905 CAACCACTCTCTCACC 10890
Score = 82.4 bits (90), Expect = 1e-10
Identities = 74/93 (80%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745
|||| |||||||| || ||||| || |||||||||||||| |||| ||||| ||||
Sbjct 6232 CCAAGTTTTCATTTACAATTCCATCGCTGGCTGCAAAAAAAGCCAGAACATGAGAGATAA 6173
Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAAT 33778
| |||||||| |||| | | || || |||||||
Sbjct 6172 AGTATTTTTCATCTGCTTTCAGCTTGTTCCAAT 6140
>seq1807
Length=48173
Score = 120 bits (132), Expect = 4e-22
Identities = 99/121 (82%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
||||||||||||| || ||||| || ||||| |||||||| ||||||| || | || |
Sbjct 45217 CCTCGTCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 45276
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| |||||||| || || || || || |||||||||||||||||||| ||||| ||||| |
Sbjct 45277 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 45336
Query 33446 C 33446
|
Sbjct 45337 C 45337
Score = 82.4 bits (90), Expect = 1e-10
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 32998 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33057
||||| |||||||| | || |||||||| || || || || || ||||| || || |||
Sbjct 43918 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 43977
Query 33058 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33092
|||| || || ||||||||||| ||||| |||||
Sbjct 43978 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 44012
>seq11560
Length=34702
Score = 100 bits (110), Expect = 4e-16
Identities = 112/147 (76%), Gaps = 2/147 (1%)
Strand=Plus/Minus
Query 63216 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63275
||||| ||||| ||||||||||||||||| || || | || || ||||||| || ||
Sbjct 8440 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 8381
Query 63276 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63334
||||| || || || ||||| |||||| || || ||| | | || || ||||||| ||
Sbjct 8380 TCCTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATGG 8322
Query 63335 TTCCAAGTATATGGCCATAACTCCAGG 63361
|||| ||| ||||| | | |||||||
Sbjct 8321 CTCCAGGTAGATGGCAAAAGCTCCAGG 8295
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622530674141560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |