Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20
2014-06-25] 53,491 sequences; 1,127,622,302 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq16976 125 7e-24
seq11560 86.0 6e-12
>seq16976
Length=50896
Score = 125 bits (138), Expect = 7e-24
Identities = 165/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
|||||| | |||||||||||| | ||| | ||| || ||||| || |||||||| ||
Sbjct 50210 GCCACCTCTCAAACGCAGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGA 50269
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
|| |||||| || |||||||||||||| ||| |||| || | |||||| || || ||
Sbjct 50270 CAGGGTGCGGCCATCTTCTAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGG 50329
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
|| ||||| ||||| |||||| ||| | | ||| | || || ||| ||| |
Sbjct 50330 AATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAAC 50389
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235
|||| ||| | || || || || || || || || || |||||||||
Sbjct 50390 CTCGAGGGTGATTGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 50438
Score = 120 bits (132), Expect = 3e-22
Identities = 164/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
|||||| | |||||||||||| | || | ||| || ||||| || |||||||| ||
Sbjct 49982 GCCACCTCTCAAACGCAGCACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCAGA 50041
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
|| |||||| || || ||||||||||| ||| |||| || | |||||| || || ||
Sbjct 50042 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGG 50101
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
|| ||||| ||||| |||||| ||| | | ||| | || || ||| ||| |
Sbjct 50102 AATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAAC 50161
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235
|||| ||| | ||| || || || || || || || || |||||||||
Sbjct 50162 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 50210
Score = 118 bits (130), Expect = 1e-21
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065
||||||| | || |||||||| | ||| | ||| || ||||| || |||||||| ||
Sbjct 49753 AGCCACCCCTCAGGCGCAGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAG 49812
Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125
|| |||||| || |||||||||||||| ||| |||| || | |||||| || || |
Sbjct 49813 ACAGGGTGCGGCCATCTTCTAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGG 49872
Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185
| || ||||| ||||| |||||| ||| | | ||| | || || ||| ||| |
Sbjct 49873 GAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAA 49932
Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235
|||| ||| | || || || || || || || || || |||||||||
Sbjct 49933 CCTCGAGGGTGATTGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 49982
Score = 116 bits (128), Expect = 3e-21
Identities = 163/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
|||||| | |||||||||||| | || | ||| || ||||| || |||||||| ||
Sbjct 50438 GCCACCTCTCAAACGCAGCACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCAGA 50497
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
|| |||||| || || ||||||||||| ||| |||| || | |||||| || || ||
Sbjct 50498 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGG 50557
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
|| ||||| ||||| |||||| ||| | | ||| | || || ||| ||| |
Sbjct 50558 AATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAAC 50617
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235
|||| ||| | ||| || || || | || || || || |||||||||
Sbjct 50618 CTCGAGGGTTATGGTCTTGCCAGTCATGGTCTTCACAAAGATCTGCATG 50666
>seq11560
Length=34702
Score = 86.0 bits (94), Expect = 6e-12
Identities = 71/87 (82%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 145693 ATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTT 145752
|||||| ||||||||||| |||| || |||||||| || |||| |||||| | ||| ||
Sbjct 9761 ATTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTGCTCTTCCGGTTGCAAGAGTCTTT 9702
Query 145753 GTAGAGCATGTACGGTCCGCCAGTCTC 145779
||| ||||||||||| ||| |||||
Sbjct 9701 GTACAGCATGTACGGCGTGCCGGTCTC 9675
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471697194541440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |