Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20
2014-06-25] 53,491 sequences; 1,127,622,302 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq16901 118 7e-22
seq16976 105 4e-18
seq2584 104 2e-17
seq33231 91.5 1e-13
>seq16901
Length=836
Score = 118 bits (130), Expect = 7e-22
Identities = 83/95 (87%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||| |||||||||||||||||||||| |||||||| ||||| || ||||||||
Sbjct 789 AAGCCCATTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 730
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||| ||||||||||||||||||||
Sbjct 729 TCATCCATTCATGCTCGTCACTAATTAGATGACGA 695
>seq16976
Length=50896
Score = 105 bits (116), Expect = 4e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
|||||||||||||||| ||| | |||||| ||| ||||| || || ||||| ||||||
Sbjct 50211 CCACCTCTCAAACGCAGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 50270
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| || | || |||| || || || || || || | | || ||||| | |||
Sbjct 50271 AGGGTGCGGCCATCTTCTAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGA 50330
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| |||||| |||||| ||||| ||||||||||| | || || | |||||
Sbjct 50331 ATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 50390
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| | || || || || || |||| ||| ||||| || |||||||||
Sbjct 50391 TCGAGGGTGATTGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 50438
Score = 98.7 bits (108), Expect = 7e-16
Identities = 162/234 (69%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
|||||||||||||||| ||| | ||||| || ||||| || || ||||| ||||||
Sbjct 50439 CCACCTCTCAAACGCAGCACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAC 50498
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| || | || || | || || || || || || | | || ||||| | |||
Sbjct 50499 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGA 50558
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| |||||| |||||| ||||| ||||||||||| | || || | |||||
Sbjct 50559 ATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 50618
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTAC 38324
|| | || || || || || |||| ||| ||||| || |||||||||||| ||
Sbjct 50619 TCGAGGGTTATGGTCTTGCCAGTCATGGTCTTCACAAAGATCTGCATGTTTAAC 50672
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| |||| |||| ||| | |||||| ||| ||||| || || ||||| ||||||
Sbjct 49755 CCACCCCTCAGGCGCAGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 49814
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| || | || |||| || || || || || || | | || ||||| | |||
Sbjct 49815 AGGGTGCGGCCATCTTCTAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGA 49874
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| |||||| |||||| ||||| ||||||||||| | || || | |||||
Sbjct 49875 ATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 49934
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| | || || || || || |||| ||| ||||| || |||||||||
Sbjct 49935 TCGAGGGTGATTGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 49982
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
|||||||||||||||| ||| | ||||| || ||||| || || ||||| ||||||
Sbjct 49983 CCACCTCTCAAACGCAGCACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAC 50042
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| || | || || | || || || || || || | | || ||||| | |||
Sbjct 50043 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGA 50102
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| |||||| |||||| ||||| ||||||||||| | || || | |||||
Sbjct 50103 ATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 50162
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| | || || || || || |||| ||| ||||| || |||||||||
Sbjct 50163 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 50210
>seq2584
Length=35824
Score = 104 bits (114), Expect = 2e-17
Identities = 80/95 (84%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||| |||||||||||||||||||||| ||||| || ||||| || ||||| ||
Sbjct 14544 AAGCCCATTCCCTTGGCTGTGGTTTCGCTGGATAGCAGGTAGGGACAGTGGGAATCTTGT 14603
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| ||| ||| ||||||||||||||||||||||||
Sbjct 14604 TCATCTATTCTTGCGCGTCACTAATTAGATGACGA 14638
>seq33231
Length=1543
Score = 91.5 bits (100), Expect = 1e-13
Identities = 77/95 (81%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||| |||||||| |||| |||| ||| |||||||| ||||| || ||||| ||
Sbjct 452 AAGCCCATTCCCTTGTCTGTAGTTTTGCTGGATAGTAGGTAGGGCCAGTGGGAATCTTGT 511
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||| | ||||||||||||||| ||
Sbjct 512 TCATCCATTCATGCACATCACTAATTAGATGATGA 546
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334728840698021
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |